New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2793794	12 (0.280)	6 (0.180)	5/198	NT	40.9%	intergenic (+60/+67)	PP_2445/PP_2446	membrane protein/hypothetical protein
	?	NC_002947	= 2793804	8 (0.240)					intergenic (+70/+57)	PP_2445/PP_2446	membrane protein/hypothetical protein

TCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCATGACGCCGCA  >  NC_002947/2793663‑2793949                                                                                                                                              |                                                                                                                                                  tcGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAacgcgaat                                                                                                                                           >  1:314658‑M2/1‑142 (MQ=255)     cGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAacgcgaatacct                                                                                                                                       >  1:775683‑M2/1‑138 (MQ=255)                   cTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTTGCCAGTGCCacgcgaatac                                                                                                                                         <  1:404540‑M2/134‑11 (MQ=255)                                                               ggAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTATCTCACCCCgg                                                                             >  1:436108/2‑150 (MQ=255)                                                                                                                ccGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCgg                                                                  <  1:408033/112‑1 (MQ=255)                                                                                                                ccGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCgg                                                                  >  2:408033/1‑112 (MQ=255)                                                                                                                        caGGGATTCGCGTGGCACTGGCAACGCGAATACCTCTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAggt                    >  2:592963/1‑150 (MQ=255)                                                                                                                           gTATTCGCGTGGCACTGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttcagccgcctcacgcttcaaacgcgctcgacgggccaggatgttgag                                 <  2:404540‑M2/134‑115 (MQ=255)                                                                                                                           gTATTCGCGTGGCACTGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttt                                                                                           >  1:1081592‑M2/1‑20 (MQ=255)                                                                                                                           gTATTCGCGTGGCACTGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttt                                                                                           <  2:1081592‑M2/76‑57 (MQ=255)                                                                                                                           gTATTCGCGTGGCACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCgg                                      >  2:60755/1‑129 (MQ=255)                                                                                                                           gTATTCGCGTGGCACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCgg                                      <  1:60755/129‑1 (MQ=255)                                                                                                                            tATTCGCGTGGCACTGGTAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttcagccgcctcacgcttcaaacgcgctcgacgggccaggatgttgaggacctcgatagccgtcg                <  1:853238‑M2/150‑132 (MQ=255)                                                                                                                            tATTCGCGTGGCACTGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgccc                                                                                                >  2:498476‑M2/1‑19 (MQ=255)                                                                                                                            tATTCGCGTGGCACTGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgccc                                                                                                <  1:498476‑M2/70‑52 (MQ=255)                                                                                                                               tctcgTGGCACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGGCATTTGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGc             <  2:422792/147‑1 (MQ=255)                                                                                                                                   gTGGCACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCAAGa         >  1:422792/1‑150 (MQ=255)                                                                                                                                          tGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCATGACGCCGCa  >  1:680927/1‑150 (MQ=255)                                                                                                                                          tGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCATGACGCCGCa  >  2:590691/1‑150 (MQ=255)                                                                                                                                              |                                                                                                                                                  TCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCATGACGCCGCA  >  NC_002947/2793663‑2793949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.