New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3120793 =	41 (0.950)	5 (0.120)	5/244	NT	11.7%	coding (694/753 nt)	PP_2737	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	3120810 =	36 (0.870)					coding (677/753 nt)	PP_2737	short‑chain dehydrogenase/reductase family oxidoreductase

CTTGCGTGACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGTTGCGACGGGTCAGGGGCGTGTCCACGAAGCCTGGG  >  NC_002947/3120662‑3120959                                                                                                                                                     |                                                                                                                                                      cccctgacccgtcgcaacgatttccccatgccacagctgtggtctgcgcagcgtgccgcccggcatatcgccaggcgcctgcccggccgccccctggaaatcaacttccccggtcttttcaccttggtgttgcgcctgctcggggcgcaa                                                                                                                                                      >  2:620506‑M2/149‑150 (MQ=255)    gCGTGACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTCGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAacac                                                                                                                                                   <  2:1004939/150‑1 (MQ=255)       tGACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCaa                                                                                                                                                <  1:769641/150‑1 (MQ=255)        gACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAg                                                                                                                                               <  1:135582/150‑1 (MQ=255)        gACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAg                                                                                                                                               <  1:433791/150‑1 (MQ=255)               aaTGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATAATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGaaaa                                                                                                                                        <  2:1047125/150‑1 (MQ=255)                      ttccccatgccacagctgtggtctgcgcagcgtgccgcccggcatatcgccaggcgcctgcccggccgccccctggaaatcaacttccccggtcttttcaccttggtgttgcgcctgctcggggcgcAACACCAAGGTGAAAAGACCggg                                                                                                                                 <  1:620506‑M2/23‑1 (MQ=255)                      gcAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCggg                                                                                                                                 <  1:272423/150‑1 (MQ=255)                          gTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAg                                                                                                                             >  2:980716/1‑150 (MQ=255)                          gTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAg                                                                                                                             >  1:573377/1‑150 (MQ=255)                           tCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGt                                                                                                                            >  2:195537/1‑150 (MQ=255)                                cccGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGAtt                                                                                                                       >  1:291406/1‑150 (MQ=255)                                       tGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAggg                                                                                                                <  2:405560/150‑1 (MQ=255)                                         ccACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGATAATACCGGGGAAGTTGATTTCCAggggg                                                                                                              <  1:309629/150‑1 (MQ=255)                                                    gatTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGAGCAGGCGCGAAGGCTGCGCCCCGAGCAGTCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAg                                                                                                   <  1:980716/150‑1 (MQ=255)                                                      ttGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGgc                                                                                                 >  2:895451/1‑150 (MQ=255)                                                      ttGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGgc                                                                                                 <  1:656615/150‑1 (MQ=255)                                                      ttGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCAACGCGCAGGCGAGCGCGCAGCGCCCCGACCAGGCCCAAGAGCGCGTGGTGGAGGGTGGGGAAGGTGATTTCCAGGGGGCGGCCGGGCAGgc                                                                                                 <  2:402952/150‑1 (MQ=255)                                                               gCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGa                                                                                        >  2:448099/1‑150 (MQ=255)                                                                   ggATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATg                                                                                    >  1:342718/1‑150 (MQ=255)                                                                   ggATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATg                                                                                    >  1:93919/1‑150 (MQ=255)                                                                         tcatTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGggc                                                                              >  2:110866/1‑150 (MQ=255)                                                                           atTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGggcgg                                                                            <  2:49812/150‑1 (MQ=255)                                                                              cctgcccggccgccccctggaaatcaacttccccggtcttttcaccttggtgttGCGCCCCGAGCAGGCGCAACACCAAg                                                                                                                                               <  1:585670‑M1/26‑1 (MQ=255)                                                                              cctgcccggccgccccctggaaatcaacttccccggtcttttcaccttggtgttGCGCCCCGAGCAGGCGCAACACCAAg                                                                                                                                               >  2:585670‑M1/55‑80 (MQ=255)                                                                               cTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACg                                                                        >  1:484191/1‑150 (MQ=255)                                                                                   tCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTgc                                                                    <  2:1124771/150‑1 (MQ=255)                                                                                   ccggccgccccctggaaatcaacttccccggtcttttcaccttggtgttGCGCCCCGAGCAGGCGCAac                                                                                                                                                     >  1:325009‑M1/50‑69 (MQ=255)                                                                                   ccggccgccccctggaaatcaacttccccggtcttttcaccttggtgttGCGCCCCGAGCAGGCGCAac                                                                                                                                                     <  2:325009‑M1/20‑1 (MQ=255)                                                                                     aTGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCGGAGCAGGCGCAac                                                                                                                                                     >  1:412158/1‑67 (MQ=255)                                                                                     aTGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAac                                                                                                                                                     <  2:412158/67‑1 (MQ=255)                                                                                      tGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCa                                                                 <  2:342718/150‑1 (MQ=255)                                                                                         cGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGAc                                                              <  1:453687/150‑1 (MQ=255)                                                                                                         ccAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATgg                                              >  1:997646/1‑150 (MQ=255)                                                                                                         ccAGCGCAAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATgg                                              >  1:997408/1‑150 (MQ=255)                                                                                                          cAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGACCGCTGCGCATACCACAGCTCTGGCATggg                                             >  2:510862/1‑150 (MQ=255)                                                                                                             cccggtcttttcaccttggtgttGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGaa                                          <  1:620506‑M1/127‑1 (MQ=255)                                                                                                               ccAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAAt                                        >  2:167231/1‑150 (MQ=255)                                                                                                                caggcgcaggcgCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATc                                       >  2:382084/1‑150 (MQ=255)                                                                                                                 aggcgcaggcgcGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCg                                      >  1:940456/1‑150 (MQ=255)                                                                                                                   gcgcaggcgcGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGtt                                    <  1:52363/150‑1 (MQ=255)                                                                                                                       aggcgcGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGTTGCGa                                >  1:413584/1‑150 (MQ=255)                                                                                                                           cttggtgttgcgcctgctcggggcgcAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAgg                                                                                                  <  1:585670‑M2/54‑1 (MQ=255)                                                                                                                           cttggtgttgcgcctgctcggggcgcAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAgg                                                                                                  >  2:585670‑M2/27‑80 (MQ=255)                                                                                                                              cgGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGTTGCGACGGGTCa                         <  1:895451/150‑1 (MQ=255)                                                                                                                                ggCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGTTGCGACGGGTCAgg                       <  1:110866/150‑1 (MQ=255)                                                                                                                                 gttgcgcctgctcggggcgcAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCgg                                                                                                       <  2:325009‑M2/49‑1 (MQ=255)                                                                                                                                 gttgcgcctgctcggggcgcAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCgg                                                                                                       >  1:325009‑M2/21‑69 (MQ=255)                                                                                                                                  ttGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGTTGCGACGGGTCAgggg                     >  2:620506‑M1/3‑150 (MQ=255)                                                                                                                                   aGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGTTGCGACGGGTCAGGGGc                    >  2:854853/1‑150 (MQ=255)                                                                                                                                         ccGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACAACATCTGTGGCATGGGGAAATCGTTGCGACGGGTCAGGGGCGTGTcc              >  1:120911/1‑150 (MQ=255)                                                                                                                                                 gcgcAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGTTGCGACGGGTCAGGGGCGTGTCCACGAAGcc      >  2:93923‑M2/5‑150 (MQ=255)                                                                                                                                                   gcAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGTTGCGACGGGTCAGGGGCGTGTCCACGAAGCCTg    >  1:409985‑M2/3‑150 (MQ=255)                                                                                                                                                     aaCACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGTTGCGACGGGTCAGGGGCGTGTCCACGAAGCCTggg  <  2:484191/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CTTGCGTGACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGTTGCGACGGGTCAGGGGCGTGTCCACGAAGCCTGGG  >  NC_002947/3120662‑3120959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.