New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3538258 | 16 (0.370) | 4 (0.100) | 4/238 | NT | 20.5% | coding (37/1116 nt) | PP_5587 | hypothetical protein |
? | NC_002947 | = 3538266 | 16 (0.390) | coding (45/1116 nt) | PP_5587 | hypothetical protein |
GGACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAACGCGCACTA > NC_002947/3538125‑3538390 | ggACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCttgccgtt < 1:670262‑M2/150‑9 (MQ=255) tGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGt < 1:797019/150‑1 (MQ=255) aCATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTggcgg > 1:317630/1‑150 (MQ=255) ggCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCg > 2:712269/1‑150 (MQ=255) aTACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACAt > 1:292257/1‑150 (MQ=255) tACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATc < 2:670262/150‑1 (MQ=255) tttAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGc > 2:1081039/1‑150 (MQ=255) ttAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCt < 1:712269/150‑1 (MQ=255) taataaGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGAGAGCAACCCATTGCTg > 1:386864/1‑150 (MQ=255) gCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTc > 2:844499/1‑109 (MQ=255) gCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTc < 1:844499/109‑1 (MQ=255) ccTCTTCTTAGAACAACTCGCCTTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAg < 1:334131/150‑1 (MQ=255) ccTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAg > 2:92830/1‑150 (MQ=255) cttcttAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGGATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGt < 1:12408/150‑1 (MQ=255) aGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAAcg < 2:916653/150‑1 (MQ=255) caacTCGCATTGCAACGGCAATCTTGGTCttgccgttgcaatgcgagttg > 2:610052‑M2/1‑29 (MQ=255) caacTCGCATTGCAACGGCAATCTTGGTCttgccgttgcaatgcgagttg < 1:610052‑M2/50‑22 (MQ=255) acTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAACGCGCACt > 1:260971/1‑150 (MQ=255) cTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAACGCGCACta > 1:580052/1‑150 (MQ=255) cGGCAATCTTGGTCttgccgttgcaatgcgagttgttctaagaagaggcattaaatgttc > 1:631313‑M2/1‑14 (MQ=255) cGGCAATCTTGGTCttgccgttgcaatgcgagttgttctaagaagaggcattaaatgttc < 2:631313‑M2/60‑47 (MQ=255) | GGACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAACGCGCACTA > NC_002947/3538125‑3538390 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |