New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4074001 = | NA (NA) | 4 (0.100) | 4/244 | NT | 18.8% | intergenic (‑495/+129) | mdtA/PP_3586 | multidrug transporter membrane fusion protein/transposase |
? | NC_002947 | 4302589 = | 18 (0.420) | intergenic (+1035/‑265) | PP_3774/PP_5627 | hypothetical protein/hypothetical protein |
TGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACTCCGATGCCATTTGGACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCATTGGGATTTGG > NC_002947/4302441‑4302737 | tcaactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgagagatcacccagcccttccgggctgcgctgtcgcacagcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatctagaaaagcAt > 1:767284‑M2/149‑150 (MQ=255) aactggtggcctcttgagtgcttagaaaacagtgggttgcatgttgtttgatgagagatcacccagcccttccgggctgcgctgtcgcacagcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatctagaaaagcATTc > 2:69732‑M2/147‑150 (MQ=255) aactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgagagatcacccagcccttccgggctgcgctgtcgcacagcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatctagaaaagcatta > 1:905774‑M2/147‑149 (MQ=255) aactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgagagatcacccagcccttccgggctgcgctgtcgcacagcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatctagaaaagcATTc > 2:751363‑M2/147‑150 (MQ=255) aactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgagagatcacccagcccttccgggctgcgctgtcgcacagcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatctagaaaagcATTc > 1:794723‑M2/147‑150 (MQ=255) aactggtggccgcttgagtgcttagaaaacaatgggttgcattttgaatgattagagatcacccagcccttccgggctgcgctgtcgcacagcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatctagaaaagcATTc > 1:202773‑M2/147‑150 (MQ=255) gTGGTCACAGCAAGCTGTGCCGACAGGGATTAACTCCGATGCCATTTGTACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGGCCTAcc > 2:444755/1‑150 (MQ=25) cAAGCTGTGCCGACAGGGATTAACTCCGATGCCATTTGGACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTc < 1:284353/150‑1 (MQ=35) tgtgCCGACAGGGATTAACTCCGATGCCATTTGGACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGa > 1:460560/1‑150 (MQ=35) gtgCCGACAGGGATTAACTCCGATGCCATTTGGACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGaa > 2:1054231/1‑150 (MQ=35) gcattttgtttgatgagagatcacccagcccttccgggctgcgctgtcgcacagcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatctagaaaagcATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCtttt < 1:1005899‑M2/42‑1 (MQ=255) ggATTAACTCCGATGCCATTTGGACCACTCTCTCATTCGGGAGCGAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTTGGCGGCTGACCTCCCCGGATCAGTCGGCGAATGCTTTTCTa > 1:904243/1‑150 (MQ=255) aTTAACTCCGATGCCATTTGGACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGa > 1:206832/1‑150 (MQ=35) tCCGATGCCATTTGGACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGa > 2:112672/1‑150 (MQ=33) atgagagatcacccagcccttccgggctgcgctgtcgcacagcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatctagcaaagtATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGAt < 2:405300‑M2/54‑1 (MQ=255) cATTTGGACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTg < 2:287619/150‑1 (MQ=32) aTTTGGACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGc > 1:1113963/1‑150 (MQ=32) tttGGACCACTATCTCAATCGGTAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCa < 2:527864/150‑1 (MQ=12) acagcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatctagaaaagcATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGa < 1:500435‑M2/65‑1 (MQ=255) acagcaaacaggatgcgcatgacgtcagatctgcactgacatcgagatctagaaaagcATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGa > 2:500435‑M2/59‑123 (MQ=255) tCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGGCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCt > 2:635978/1‑150 (MQ=11) aCGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGa < 2:481383/150‑1 (MQ=32) cGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGaa < 2:206832/150‑1 (MQ=32) tttCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTgg < 1:658759/150‑1 (MQ=32) ccGCGCATTGGTAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTaa < 1:444755/150‑1 (MQ=21) ttGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCa < 1:455137/150‑1 (MQ=35) gAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGACAATGACCATCTCGATGTGAGATCTTTTCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCAtgtg > 1:411913/1‑150 (MQ=11) tAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATATAAACAGATACGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCAttg > 1:1040075/1‑150 (MQ=14) tATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCAttgggatttgg < 2:460560/150‑1 (MQ=255) | TGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACTCCGATGCCATTTGGACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCATTGGGATTTGG > NC_002947/4302441‑4302737 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |