New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5456645 =	39 (0.900)	2 (0.050)	4/244	NT	5.0%	coding (329/2607 nt)	leuS	leucine‑‑tRNA ligase
	?	NC_002947	5456664 =	38 (0.910)					coding (348/2607 nt)	leuS	leucine‑‑tRNA ligase

TGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCTTTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGAAAAAGGCATCATCTACCGCAAGAACGGTACCGTGAACTGGGACCCGGCGGAC  >  NC_002947/5456519‑5456802                                                                                                                                                   |                                                                                                                                           tgacaggCAACAACAGCCTACAGCCGATGGGCTGGGACGCTTTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAgcctgggcctgg                                                                                                                                        >  2:103276/6‑150 (MQ=255)      ggCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCTTTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATc                                                                                                                                   <  2:1036393/150‑1 (MQ=255)         aaGAACGTCCTGCAGCCGATGGGCTGGGACGCTTTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGAc                                                                                                                                >  2:837741/1‑150 (MQ=255)         aaGAACGTCCTGCAGCCGATGGGCTGGGACGCTTTCGGCATGCCCGCGGAAAACGCGGCGACGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAAAGCCTGGGCCTGGCCATCGAc                                                                                                                                >  2:384355/1‑150 (MQ=255)                  cTGCAGCCGATGGGCTGGGACGCTTTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACgg                                                                                                                       >  1:677212/1‑149 (MQ=255)                  cTGCAGCCGATGGGCTGGGACGCTTTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGt                                                                                                                       <  2:947034/150‑1 (MQ=255)                     cAGCCGATGGGCTGGGACGCTTTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGaa                                                                                                                    <  2:375375/150‑1 (MQ=255)                          gATGGGCTGGGACGCTTTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTcac                                                                                                               >  2:1076143/1‑150 (MQ=255)                               gCTGGGACGCTTTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCt                                                                                                          >  1:343466/1‑150 (MQ=255)                                 tGGGACGCTTTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGt                                                                                                                       <  2:586327/135‑1 (MQ=255)                                 tGGGACGCTTTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGt                                                                                                                       >  1:586327/1‑135 (MQ=255)                                   ggACGCTTTCGGCATGCCCGCGGAAAACGCGGCGGTGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACGGGGCACATGAAGTCACCACCTGcca                                                                                                      >  2:335458/1‑148 (MQ=255)                                    gACGCTTTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACAGCGACTACAGGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCaaa                                                                                                     <  1:334295/150‑1 (MQ=255)                                         tttCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAgcctgggc                                                                                                                                            >  2:848539/1‑106 (MQ=255)                                         tttCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAgcctgggc                                                                                                                                            <  1:848539/106‑1 (MQ=255)                                                    ccGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGtt                                                                                     <  1:146419/150‑1 (MQ=255)                                                                 tgctcccaacggtaatagtcgggtttgcaggtggtgacttcacgtgcccagtcgatggccaggcccagctcaagagcctgggCCTGGCCATCGACTgg                                                                                                                             >  1:953797‑M2/83‑98 (MQ=255)                                                                 tgctcccaacggtaatagtcgggtttgcaggtggtgacttcacgtgcccagtcgatggccaggcccagctcaagagcctgggCCTGGCCATCGACTgg                                                                                                                             <  2:953797‑M2/16‑1 (MQ=255)                                                                   cgATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGt                                                                      <  2:1003044/150‑1 (MQ=255)                                                                    gATGAAAAACAACGCCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTCGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGtt                                                                     >  2:194207/1‑150 (MQ=255)                                                                       gAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCAc                                                                  >  1:754429/1‑150 (MQ=255)                                                                       gAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGCTCAc                                                                  <  1:837741/150‑1 (MQ=255)                                                                         aaaaCAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCAccc                                                                >  1:1029035/1‑150 (MQ=255)                                                                           ggtaatagtcgggtttgcaggtggtgacttcacgtgcccagtcgatggccaggcccagctcaagagcctgggcctgg                                                                                                                                        <  2:1043954‑M2/5‑1 (MQ=255)                                                                           ggtaatagtcgggtttgcaggtggtgacttcacgtgcccagtcgatggccaggcccagctcaagagcctgggcctgg                                                                                                                                        >  1:1043954‑M2/73‑77 (MQ=255)                                                                           aacaacGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGc                                                              >  1:656435/1‑150 (MQ=255)                                                                                     ccccGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGaaa                                                    >  2:597560/1‑150 (MQ=255)                                                                                      cccGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGaaaa                                                   >  2:347769/1‑150 (MQ=255)                                                                                        cGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCTATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGAAAAAg                                                 >  2:245421/1‑150 (MQ=255)                                                                                        cGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCTATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGAAAAAg                                                 <  1:245421/150‑1 (MQ=255)                                                                                             aaGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGAAAAAGGcatc                                            <  1:347769/150‑1 (MQ=255)                                                                                                     gTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTAcc                                                                                        <  1:59453/98‑1 (MQ=255)                                                                                                     gTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTAcc                                                                                        >  2:59453/1‑98 (MQ=255)                                                                                                        cGAAAACATCGACTACATGAGGTGCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGAAAAAGGCATCATCTACCGCaa                                 <  1:335458/150‑1 (MQ=255)                                                                                                        cGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGTCTGTTCGAAAAAGGCATCATCTACCGCaa                                 <  1:103276/150‑1 (MQ=255)                                                                                                          aaaaCATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGAAAAAGGCATCATCTACCGCAAGa                               >  2:601725/1‑150 (MQ=255)                                                                                                               ccagtcgatggccaggCCCAGGCTCTTGAGC‑TGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCa                                                                              >  1:953797‑M1/17‑98 (MQ=255)                                                                                                               ccagtcgatggccaggCCCAGGCTCTTGAGC‑TGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCa                                                                              <  2:953797‑M1/82‑1 (MQ=255)                                                                                                               aTCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGAAAAAGGCATCATCTACCGCAAGAACGGt                          >  1:975530/1‑150 (MQ=255)                                                                                                                  gACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGAAAAAGGCATCATCTACCGCAAGAACGGTAcc                       <  2:1029035/150‑1 (MQ=255)                                                                                                                    cTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGAAAAAGGCATCATCTACCGCAAGAACGGTACCGt                     <  1:194207/150‑1 (MQ=255)                                                                                                                          gAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGAAAAAGGCATCATCTACCGCAAGAACGGTACCGTGAACTg               >  1:656579/1‑150 (MQ=255)                                                                                                                          gAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGAAAAAGGCATCATCTACCGCAAGAACGGTACCGTGAACTg               >  1:999152/1‑150 (MQ=255)                                                                                                                          ccaggCCCAGGCTCTTGAGC‑TGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTAcc                                                                                        <  2:1043954‑M1/72‑1 (MQ=255)                                                                                                                          ccaggCCCAGGCTCTTGAGC‑TGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTAcc                                                                                        >  1:1043954‑M1/6‑77 (MQ=255)                                                                                                                              aCCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGAAAAAGGCATCATCTACCGCAAGAACGGTACCGTGAACTGGGAc           >  1:1111790/1‑150 (MQ=255)                                                                                                                                CCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCCCCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGt                                                                      >  2:1032266‑M1/1‑89 (MQ=255)                                                                                                                                CCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGt                                                                      <  1:1032266‑M1/89‑1 (MQ=255)                                                                                                                                   G‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGAAAAAGGCATCATCTACCGCAAGAACGGTACCGTGAACTGGGACCCGGc      >  2:270314‑M1/1‑150 (MQ=255)                                                                                                                                     cTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGAAAAAGGCATCATCTACCGCAAGAACGGTACCGTGAACTGGGACCcggcg     <  2:939154/150‑1 (MQ=255)                                                                                                                                        aaGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGAAAAAGGCATCATCTACCGCAAGAACGGTACCGTGAACTGGGACCCGGCGGAc  <  2:1111790/150‑1 (MQ=255)                                                                                                                                        aaGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGAAAAAGGCATCATCTACCGCAAGAACGGTACCGTGAACTGGGACCCGGCGGAc  <  1:601725/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                           TGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCTTTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAG‑CTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAGTCACCACCTGCAAACCCGACTATTACCGTTGGGAGCAGTGGCTGTTCACCCGCCTGTTCGAAAAAGGCATCATCTACCGCAAGAACGGTACCGTGAACTGGGACCCGGCGGAC  >  NC_002947/5456519‑5456802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.