New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5601914 | 46 (1.060) | 3 (0.070) | 3/242 | NT | 6.0% | coding (1619/5418 nt) | PP_4924 | subtilase family serine protease |
? | NC_002947 | = 5601962 | 50 (1.210) | coding (1571/5418 nt) | PP_4924 | subtilase family serine protease |
CGCGGTCAAGACATCATCGCCCGCGCTGCCGTAAAGCGTCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGACGCACCTCTCCTACCGGCTCGACCTGGCCGAGC > NC_002947/5601814‑5602105 | cgcgGTCAAGACATCATCGCCCGCGCTGCCGTAAAGCGTCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTg > 1:822255‑M2/1‑149 (MQ=255) ccGCGCTGCCGTAAAGCGTCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGa < 1:195238/150‑1 (MQ=255) cgcgCTGCCGTAAAGCGTCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGAc < 2:825653/150‑1 (MQ=255) cgcgCTGCCGTAAAGAGTCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGAc < 1:162662/150‑1 (MQ=255) gTAAAGCGTCTGTACGCCG‑AGAGCTGCGAGGTCGAGCGTGCTGGCTGAAGCACTCTGGCTGATG‑TAGGCCCTTCTGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCCCCTGGGCCACGATCAGATTACCGACAGTATCgcc > 2:491711/1‑148 (MQ=255) aaaGCGTCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCga < 1:1053734/150‑1 (MQ=255) aaaGCGTCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCCTGCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCga < 1:851417/150‑1 (MQ=255) tCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGAtt < 1:475357/127‑1 (MQ=255) tCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGAtt > 2:475357/1‑127 (MQ=255) tggaCGCCGCAGCGCT‑CGGCGTACAGCGTGCTGCCTTGAGCACTCTGGCT‑ATGCCAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTc > 1:630559/4‑150 (MQ=255) tACGCCG‑AGCCCTGCGGCGCCCAGCGTGCTGCCTTTAGCACTCTGTCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCCCCCTCCTCGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCAc < 2:287032/150‑1 (MQ=255) ccG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGcc > 2:113241/1‑150 (MQ=255) gcgTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCgg > 2:497740/1‑150 (MQ=255) gTCCAGCGTGCTGGCTTGAGCACGCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTc < 2:296911/150‑1 (MQ=255) gTCCAGCGTCCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTc < 1:425412/150‑1 (MQ=255) cAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTc > 2:992460/1‑150 (MQ=255) cGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCAcc < 2:93840/150‑1 (MQ=255) gTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCa < 1:66705/150‑1 (MQ=255) ccTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACa > 1:957176/1‑150 (MQ=255) ccTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACa < 2:957176/150‑1 (MQ=255) ttGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGt > 2:756757/1‑150 (MQ=255) ttGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGt < 2:391259/150‑1 (MQ=255) ctctGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCt > 1:776804/1‑130 (MQ=255) ctctGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCt < 2:776804/130‑1 (MQ=255) tctGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAgc < 2:606184/148‑1 (MQ=255) tctGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAgc > 1:606184/1‑148 (MQ=255) cTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTgggc > 2:987209‑M2/1‑61 (MQ=255) cTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTgggc < 1:987209‑M2/65‑5 (MQ=255) tGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTgggcctacatcagccagagtgctcaaggcagcacgctggacgccgcagcgctcggcgta > 1:650663‑M2/1‑60 (MQ=255) tGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTgggcctacatcagccagagtgctcaaggcagcacgctggacgccgcagcgctcggcgta < 2:650663‑M2/119‑60 (MQ=255) tGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTc < 2:566530/121‑1 (MQ=255) tGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTc > 1:566530/1‑121 (MQ=255) tGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCggg > 2:1048555/1‑150 (MQ=255) tGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGGGCGACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCggg > 2:156949/1‑150 (MQ=255) ggCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTgggcctacatcagccagagtgctcaaggcagcacgctggacgccgcagcgctcggcgtacagacgctttacggcagcgcgggcgatgatgtcttgac < 2:625910‑M2/150‑98 (MQ=255) gCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCgg > 2:361398/1‑141 (MQ=255) gCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCgg < 1:361398/141‑1 (MQ=255) gCCCTTCGGGAAGTGGGCCCCCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGAcc < 2:149906/150‑1 (MQ=255) cccTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCt < 1:884678/150‑1 (MQ=255) cTTCGGGAATTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCg > 1:811585/1‑150 (MQ=255) cTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTcc < 1:730741/105‑1 (MQ=255) cTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTcc > 2:730741/1‑105 (MQ=255) tCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAAACTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGtt < 1:491711/150‑1 (MQ=255) gAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTAccc < 1:802254/150‑1 (MQ=255) gTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGa < 1:497740/150‑1 (MQ=255) tGGGCCCGTTTGACGAAGGCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGAc < 2:377669/150‑1 (MQ=255) ttGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGACGCACCtctc < 2:811585/150‑1 (MQ=255) gAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTAc < 1:985899/130‑1 (MQ=255) gAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTAc > 2:985899/1‑130 (MQ=255) gAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGACGCACctct < 2:164237/144‑1 (MQ=255) gAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGACGCACctct > 1:164237/1‑144 (MQ=255) aGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACGGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGACGCACCTCTCCTACCGGCTCg > 1:183068/1‑150 (MQ=255) agagTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGACGCACCTCTCCTACCGGCTCGAcc < 1:931500/150‑1 (MQ=255) gagTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCa < 2:920761/63‑1 (MQ=255) gagTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCa > 1:920761/1‑63 (MQ=255) cccTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGACGCACCTCTCCTACCGGCTCGACCTGGCCGAGc < 1:756757/150‑1 (MQ=255) | CGCGGTCAAGACATCATCGCCCGCGCTGCCGTAAAGCGTCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGACGCACCTCTCCTACCGGCTCGACCTGGCCGAGC > NC_002947/5601814‑5602105 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |