New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5692795	53 (1.220)	5 (0.120)	5/244	NT	8.8%	coding (39/570 nt)	PP_4995	exopolysaccharide biosynthesis protein
	?	NC_002947	= 5692824	53 (1.270)					coding (68/570 nt)	PP_4995	exopolysaccharide biosynthesis protein

CGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGAGCCTGGCCGACATCCTCGAGCAACTGCGCCCGGACGAAACGCCGCCGGCCAGCACCTTGCA  >  NC_002947/5692685‑5692971                                                                                                                                            |                                                                                                                                                    cgcgAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGcc                                                                                                                                           >  2:723109/1‑150 (MQ=255)    gAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAg                                                                                                                                        >  2:778428/1‑150 (MQ=255)     aaGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGa                                                                                                                                       <  2:863552/150‑1 (MQ=255)           cTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCa                                                                                                                                 >  1:786490/1‑150 (MQ=255)            tGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCTTTCTGCGCCCAGACCCTCAc                                                                                                                                <  2:943730/150‑1 (MQ=255)                      gACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATG‑AAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATAtcgtcg                                                                                                                     <  2:503951/150‑1 (MQ=255)                        cacaAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCGCGTATATCGTCGa                                                                                                                    <  2:277787/150‑1 (MQ=255)                         acaAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAg                                                                                                                   >  1:1002877/1‑150 (MQ=255)                           aaaGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGca                                                                                                                 >  2:1074691/1‑150 (MQ=255)                                  aCCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGATCCTGATCGCCCTGCCTCACATAGCCGATCCGACCTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAg                                                                                                          >  2:305895/1‑150 (MQ=255)                                      tGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATg                                                                                                      <  2:194372/150‑1 (MQ=255)                                            tctcGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCa                                                                                                >  2:32585/1‑150 (MQ=255)                                              tcGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATg                                                                                              <  2:545878/150‑1 (MQ=255)                                               cGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATgg                                                                                             <  1:794068/150‑1 (MQ=255)                                                 ctacttGGCGTCACGCTATCCCCCATGAAACACCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGTCGATCCGAACTTCGCCCAGACCCTCCCGTATATCGTCGAGCACAATGTGCAGGGTGTCATGTGc                                                                                           <  2:450772/145‑1 (MQ=255)                                                  cACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGAcc                                                                                                                                     <  1:910061/107‑1 (MQ=255)                                                  cACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGAcc                                                                                                                                     >  2:910061/1‑107 (MQ=255)                                                     cTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATg                                                                                              >  1:404561/1‑143 (MQ=255)                                                     cTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATg                                                                                              <  2:404561/143‑1 (MQ=255)                                                     cTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCtgg                                                                                       >  1:716882/1‑150 (MQ=255)                                                     cTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCtgg                                                                                       >  2:537169/1‑150 (MQ=255)                                                      tGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCtggt                                                                                      <  1:537169/150‑1 (MQ=255)                                                                 tATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGAc                                                                           <  2:716882/150‑1 (MQ=255)                                                                 tATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGAc                                                                           <  2:526855/150‑1 (MQ=255)                                                                 tATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGAATATCGCCCAGCACAATGATCATGGCTCCATGGGCCTGGTGGCCAACCGAc                                                                           >  2:1030194/1‑150 (MQ=255)                                                                   tCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACca                                                                         <  2:786490/150‑1 (MQ=255)                                                                      accATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAg                                                                      <  2:957328/149‑1 (MQ=255)                                                                         aTGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGaa                                                                   >  2:775835/1‑150 (MQ=255)                                                                          tGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAAc                                                                  <  1:778428/150‑1 (MQ=255)                                                                             aaaCCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGa                                                               >  1:542777/1‑150 (MQ=255)                                                                             aaaCCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGa                                                               <  1:723109/150‑1 (MQ=255)                                                                                  cTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGAGCCTg                                                          >  1:654790/1‑150 (MQ=255)                                                                                  cTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGAGCCTg                                                          >  1:555028/1‑150 (MQ=255)                                                                                   tCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATgg                                                                                             <  2:980445/114‑1 (MQ=255)                                                                                   tCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATgg                                                                                             >  1:980445/1‑114 (MQ=255)                                                                                       aCCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGAGCCTGGCCgc                                                     >  2:809945/1‑149 (MQ=255)                                                                                          cAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGAGCCTGGCCGACAt                                                  >  1:1016024/1‑150 (MQ=255)                                                                                              tACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGC‑GATCAggaactggtgcttgaggtagctgggtgcgagggttttcatgggggatagtgtggcgccaggtggcgagactgacaaggtgggctttctctcggttctgccagcc                                             <  2:62105‑M2/150‑105 (MQ=255)                                                                                                ccTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGAGCCTGGCCGACATCCTCGa                                            <  1:32585/150‑1 (MQ=255)                                                                                                ccTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGAGCCTGGCCGACATCCTCGa                                            <  1:849695/150‑1 (MQ=255)                                                                                                 cTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGAGCCTGGCCGACATCCTCGAg                                           <  2:1016024/150‑1 (MQ=255)                                                                                                  tCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGTGGACAATGAGCATGGCGCCATGGGCATGGCGGACAACCGACCACAGGAACTGAGCCTGGCCGACATCCTCGAGc                                          >  1:519306/1‑150 (MQ=255)                                                                                                        aCCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCAAGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGAGCCTGGCCGACATCCTCGAGCAACTgc                                    >  1:912116/1‑150 (MQ=255)                                                                                                         ccAGTTCCTGATCGCCATGCCGCACATGGCCGATCCgaactggtgcttgaggtagctgggtgcgagggttttcatgggggatagtgtggcgccaggtggcgagactgacaaggtgggctttgtgtcgcttttgccagccccttcgcgggc                                   <  2:1097527‑M2/150‑115 (MQ=255)                                                                                                          cAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGCCCCTCACGTATATCGTCGAGCACAACTAGCGGGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGAGCCTGGCCGACATCCTCGAGCAACTgcgc                                  >  1:412263/1‑150 (MQ=255)                                                                                                          cAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGa                                                                    <  2:775866/116‑1 (MQ=255)                                                                                                          cAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGa                                                                    >  1:775866/1‑116 (MQ=255)                                                                                                            gTTCCTGATCGCCATGCCGCACATGGCCGATCCgaactggtgcttgaggtagctgggtgcgagggttttcatgggggatagtgtggcgccaggtggcgagactgacaaggtgggctttgtgt                                                            <  2:605284‑M2/122‑90 (MQ=255)                                                                                                            gTTCCTGATCGCCATGCCGCACATGGCCGATCCgaactggtgcttgaggtagctgggtgcgagggttttcatgggggatagtgtggcgccaggtggcgagactgacaaggtgggctttgtgt                                                            >  1:605284‑M2/1‑33 (MQ=255)                                                                                                             ttCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCtggtg                                                                                     >  1:961854/1‑96 (MQ=255)                                                                                                             ttCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCtggtg                                                                                     <  2:961854/96‑1 (MQ=255)                                                                                                                cTGATCGCCATGCCGCACATGGCCGATCAggaactggtgcttgaggtagctgggtgcgagggttttcatgggggatagtgtggggccaggtggcgagactgacaaggtgggctttgtgtcgcttttgccagccccttcgcgggcatgccc                            <  1:921935‑M2/150‑122 (MQ=255)                                                                                                                    tCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGAGCCTGGCCGACATCCTCGAGCAACTGCGCCCGGACGaaa                        <  2:912116/150‑1 (MQ=255)                                                                                                                        cATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCCTGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGAGCCTGGCCGACATCCTCGAGCAACTGCGCCCGGACGAAAcgcc                    >  1:52863/1‑150 (MQ=255)                                                                                                                           gCCGCACATGCCCGTTCCGAACTTCGCACAGACCCTCACGTATATCGGAGAGCACCATGAGCATGGCGCCAGGTGCCTTGTGGTCAACCGACCACAGCAACTGAGCCTGGCCGACATCCTCGAGCAACTGCGTCCGGACGAAACgccgcc                 >  2:228385/1‑150 (MQ=255)                                                                                                                             cGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGAGCCTGGCCGACATCCTCGAGCAACTGCGCCCGGACGAAACGCCGCCgg               <  1:906432/150‑1 (MQ=255)                                                                                                                               cacaTGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGACCTGAGCCTGGCCGACATCCTCGAGCAACTGCGCCCGGACGAAACGCCGCCGGcc             <  2:1002877/150‑1 (MQ=255)                                                                                                                                     gCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGAGc                                                             >  2:1054777/1‑96 (MQ=255)                                                                                                                                     gCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGAGc                                                             <  1:1054777/96‑1 (MQ=255)                                                                                                                                          tCCTAACTTCGCCCAGACCCTCCCGCATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGAGCCTGGCCTACATCCTCGAGCAACTGCGCCCGGACGAAACGCCGCCGGCCAGCACCTTGCa  <  1:305895/150‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                    CGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGACCCTCACGTATATCGTCGAGCACAATGAGCATGGCGCCATGGGCCTGGTGGTCAACCGACCACAGGAACTGAGCCTGGCCGACATCCTCGAGCAACTGCGCCCGGACGAAACGCCGCCGGCCAGCACCTTGCA  >  NC_002947/5692685‑5692971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.