New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5796767	43 (0.990)	6 (0.150)	6/242	NT	12.4%	coding (1189/4446 nt)	gltB	L‑glutamate synthase subunit alpha
	?	NC_002947	= 5796785	44 (1.070)					coding (1171/4446 nt)	gltB	L‑glutamate synthase subunit alpha

CAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAGGCACACCGCGTGGCGGCCTTCGGTCATGACGA  >  NC_002947/5796636‑5796931                                                                                                                                                       |                                                                                                                                                   cAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCtt                                                                                                                                                    <  1:222479/150‑1 (MQ=255)             gATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGGCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGCTTTGGCTC‑GGGCCGACACGGCCCTTGGCCAGCACGTc                                                                                                                                        <  2:715376/150‑1 (MQ=255)                 cGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCa                                                                                                                                    <  1:662904/150‑1 (MQ=255)                   ggTGGCGTGCTAACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAgg                                                                                                                                  <  1:389943/150‑1 (MQ=255)                     gggcGCGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCAAGGGCCGTGTCGGCCCGgccagatccttgccgtgga                                                                                                                                  >  1:322302‑M2/2‑131 (MQ=255)                            cTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGcc                                                                                                                         <  1:32278/150‑1 (MQ=255)                                 gCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATa                                                                                                                    >  2:244121/1‑150 (MQ=255)                                   agccagcGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATTGCCCCATACg                                                                                                                  >  2:511695/1‑150 (MQ=255)                                     ccagcGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTTGCCC‑GGGCCGACACGTCCCTTGGCCAGCACTTCCTCAGGCTGATATCCCCATACGcc                                                                                                                >  1:745380/1‑150 (MQ=255)                                            ttGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTcc                                                                                                         >  2:89348/1‑150 (MQ=255)                                               tACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAg                                                                                                      <  2:628025/150‑1 (MQ=255)                                                aCGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAgg                                                                                                     <  1:383139/150‑1 (MQ=255)                                                aCGGGTGGCGCGACTTCAGGCGGTTGTCGAGGGTGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAgg                                                                                                     <  1:292502/150‑1 (MQ=255)                                                    gTGGCACGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGAt                                                                                                 >  1:992659/1‑150 (MQ=255)                                                     tGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCCGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATg                                                                                                <  2:770971/150‑1 (MQ=255)                                                      ggCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATgg                                                                                               <  1:1087433/150‑1 (MQ=255)                                                       gcacgACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGt                                                                                              <  2:992659/147‑1 (MQ=255)                                                         gcgACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGa                                                                                            >  1:43518/1‑150 (MQ=255)                                                         gcgACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGa                                                                                            >  2:285529/1‑150 (MQ=255)                                                          cgACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGAt                                                                                           <  1:721335/150‑1 (MQ=255)                                                          cgACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGAt                                                                                           <  2:519002/150‑1 (MQ=255)                                                           gACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATg                                                                                          <  1:1067990/150‑1 (MQ=255)                                                                   gCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGcc                                                                                                                         >  1:1059716/1‑111 (MQ=255)                                                                   gCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGcc                                                                                                                         <  2:1059716/111‑1 (MQ=255)                                                                       ttGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATtggtg                                                                              <  1:695018/150‑1 (MQ=255)                                                                       ttGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATtggtg                                                                              <  2:43518/150‑1 (MQ=255)                                                                        tGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATtggtgg                                                                             >  2:888475/1‑150 (MQ=255)                                                                        tGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATtggtgg                                                                             >  2:888449/1‑150 (MQ=255)                                                                          tCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATtggtggtg                                                                           <  1:244121/150‑1 (MQ=255)                                                                               ggCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCAc                                                                      <  1:180124/150‑1 (MQ=255)                                                                                           gAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCgg                                                          <  1:89348/150‑1 (MQ=255)                                                                                             ggATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTTACCCAGCGCGCCGGGc                                                        <  2:325546/150‑1 (MQ=255)                                                                                             ggATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGc                                                        <  1:888475/150‑1 (MQ=255)                                                                                             ggATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGc                                                        <  1:888449/150‑1 (MQ=255)                                                                                                    gCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGAcc                                                 <  1:372388/150‑1 (MQ=255)                                                                                                         tttCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTAc                                            >  2:983213/1‑150 (MQ=255)                                                                                                                 tCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCAATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGc                                    >  2:747766/1‑150 (MQ=255)                                                                                                                            gATCTGGCCC‑GGGCCGACACGGCCCTTggccagatccttgccgtggacaccgaaaccggccagatcctcgacaccgacgccatcgacaaccgcctgaa                                                                             >  1:498692‑M2/1‑27 (MQ=255)                                                                                                                            gATCTGGCCC‑GGGCCGACACGGCCCTTggccagatccttgccgtggacaccgaaaccggccagatcctcgacaccgacgccatcgacaaccgcctgaa                                                                             <  2:498692‑M2/98‑72 (MQ=255)                                                                                                                            gATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATTGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAGGCACACcgc                         <  1:511695/150‑1 (MQ=255)                                                                                                                             aTCTGGCCC‑GGGCCGACACGGCCCTTggccagatccttgccgtggacaccgaaaccggccagatcctcgacaccgacgccatcgacaaccgcctgaagtcgcgccac                                                                   <  1:479324‑M2/107‑82 (MQ=255)                                                                                                                             aTCTGGCCC‑GGGCCGACACGGCCCTTggccagatccttgccgtggacaccgaaaccggccagatcctcgacaccgacgccatcgacaaccgcctgaagtcgcgccac                                                                   >  2:479324‑M2/1‑26 (MQ=255)                                                                                                                             aTCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAGGCACACcgcg                        >  1:488199/1‑150 (MQ=255)                                                                                                                                  gCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAGGCACACCGCGTggcg                   <  1:285529/150‑1 (MQ=255)                                                                                                                                    cc‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCggg                                                         <  2:45037/110‑1 (MQ=255)                                                                                                                                    cc‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCggg                                                         >  1:45037/1‑110 (MQ=255)                                                                                                                                    cc‑GGGCCGACACGGCCCGgccagatccttgccgtggacaccgaaaccggccagatcctcgacaccgacgccatcgacaaccgcctgaagtcgcgccacccgtacaagcgctggctgcgtcagcacgccacccgcatccaggcgacgctg                  <  1:482882‑M2/150‑132 (MQ=255)                                                                                                                                          ccGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCAATTTCCGAGGCGATGGTGATTTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAGGCACACCGCGTGGCGGCCTTCg            <  1:747766/150‑1 (MQ=255)                                                                                                                                             acacGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAGGCACACCGCGTGGCGGCCTTCgggc         >  2:342792/1‑148 (MQ=255)                                                                                                                                                 ggCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCa                                                                       <  1:159577/84‑1 (MQ=255)                                                                                                                                                 ggCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCa                                                                       >  2:159577/1‑84 (MQ=255)                                                                                                                                                 cctgcTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAGGCACACCGCGTGGCGGCCTTCGGTCATGa     >  2:683917/5‑150 (MQ=255)                                                                                                                                                  ctgcTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAGGCACACCGCGTGGCGGCCTTCGGTCATGAc    <  1:683917/147‑1 (MQ=255)                                                                                                                                                  cggcgtGGCCAGCGCTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGGGGTGGGCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAGGCACACCGCGTGGCGGCCTTCGGTCATGAc    <  1:127315/145‑1 (MQ=255)                                                                                                                                                    ccTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAGGCACACCGCGTGGCGGCCTTCg            <  1:1083026/140‑1 (MQ=255)                                                                                                                                                    ccTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAGGCACACCGCGTGGCGGCCTTCg            >  2:1083026/1‑140 (MQ=255)                                                                                                                                                    ccTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAGGCACACCGCGTGGCGGCCTTCGGTCATGACGa  >  2:254197/1‑150 (MQ=255)                                                                                                                                                       |                                                                                                                                                   CAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCC‑GGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAGGCACACCGCGTGGCGGCCTTCGGTCATGACGA  >  NC_002947/5796636‑5796931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.