Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 764,126 | T→C | 9.7% | Q133R (CAG→CGG) | PP_0656 ← | putative Amino acid ABC transporter permease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 764,126 | 0 | T | C | 9.7% | 104.5 / 3.0 | 41 | Q133R (CAG→CGG) | PP_0656 | putative Amino acid ABC transporter permease |
Reads supporting (aligned to +/- strand): ref base T (19/18); new base C (2/2); total (21/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.68e-01 |
GCATGCCCAGCGCCAATGCTGCTTCACGTTGCCCACGGGCCACGCCGAGGATGCCGGCGCGGAAGATCTCGCTCAGGTAGGCCCCGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACCCACCAGCACCGCGCTGTTGGATAACCGTGCCAGCGCGGCGGCAAAGCCGAGCAGCACGG > NC_002947/763983‑764267 | gcATGCCCAGCGCCAATGCTGCTTCACGTTGCCCACGGGCCACGCCGAGGATGCCGGCGCGGAAGATCTCGCTCAGGTAGGCCCCGTAGTTCAGCGACCAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCCCCTGCGGCa > 1:544248/1‑150 (MQ=255) gcgcCAATGCTGCTTCACGTTGCCCACGGGCCACGCCGAGGATGCCGGCGCGGAAGATCTCGCTCAGGTAGGCCCCGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGt < 1:937655/150‑1 (MQ=255) gcCAATGCTGCTTCACGTTGCCCACGGGCCACGCCGAGGATGCCGGCGCGGAAGATCTCGCTCAGGTAGGCCCCGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAg < 2:55723/150‑1 (MQ=255) cAATGCTGCTTCACGTTGCCCACGGGCCACGCCGAGGATGCCGGCGCGGAAGATCTCGCTCAGGTAGGCCCCGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGAt < 1:893395/150‑1 (MQ=255) ctgctTCACGTTGCCCACGGGCCACGCCGAGGATGCCGGCGCGGAAGATCTCGCTCAGGTAGGCCCCGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATcagca < 1:626117/150‑1 (MQ=255) aCGTTGCCCACGGGCCACGCCGAGGATGCCGGCGCGGAAGATCTCGCTCAGGTAGGCCCCGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTg < 1:498816/150‑1 (MQ=255) ttGCCCACGGGCCACGCCGAGGATGCCGGCGCGGAAGATCTCGCTCAGGTAGGCCCCGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGAt < 1:24950/150‑1 (MQ=255) ccACGGGCCACGCCGAGGATGCCGGCGCGGAAGATCTCGCTCAGGTAGGCCCCGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATcagc > 1:833833/1‑150 (MQ=255) ccACGCCGAGGATGCCGGCGCGGAAGATCTCGCTCAGGTAGGCCCCGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAgcggcg > 1:1053339/1‑150 (MQ=255) aCGCCGAGGATGCCGGCGCGGAAGATCTCGCTCAGGTAGGCCCCGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTg > 2:387554/1‑150 (MQ=255) cGAGGATGCCGGCGCGGAAGATCTCGCTCAGGTAGGCCCCGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCAc > 2:953481/1‑150 (MQ=255) ccGGCGCGGAAGATCTCGCTCAGGTAGGCCCCGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAAc < 2:389553/150‑1 (MQ=255) gcgcGGAAGATCTCGCTCAGGTAGGCCCCGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGCGTTTGGATCAGCAGCGGCGTGCCACGGAAGAACGAg < 1:641242/150‑1 (MQ=255) gcgcGGAAGATCTCGCTCAGGTAGGCCCCGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAg < 2:1076220/150‑1 (MQ=255) tcGCTCAGGAACGCCCCTTAGGCCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTg > 2:976145/1‑150 (MQ=255) tCAGGTAGGCCCCGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCca > 1:200832/1‑150 (MQ=255) gCCCCGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCAcacccacc < 2:384844/150‑1 (MQ=255) ccccGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACccacca < 2:833833/150‑1 (MQ=255) ccccGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACccacca < 2:1053339/150‑1 (MQ=255) cccGTAGTTCAGCGACAAGGCAACGATGCCGGCGCTGACGGCCCCGCGTACCAGGCCCACATACGGCAGCCCCAGGTAGATCAGCAGCACCCGGATCAGCACCGGCCTCCCACGGCAGAACGACGCGCACAAGCTGGCCCCACcccccaa > 2:842677/1‑149 (MQ=255) ccGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACCCACCAGc > 1:718065/1‑150 (MQ=255) aGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTg > 2:999322/1‑131 (MQ=255) aGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTg < 1:999322/131‑1 (MQ=255) ggACAAGTCAATGATGCCGGCGCTGATGGCGCAGGGTACCAGGCTCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACCCACCAGCACCGCGCTGtt < 2:233000/149‑1 (MQ=255) gACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACCCACCAGCACCGCGCTGTTg > 1:151405/1‑150 (MQ=255) aCAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACCCACCAGCACCGCGCTGTTgg < 2:227031/150‑1 (MQ=255) ggCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACCCACCAGCACCGCGCTGTTGGATaa > 2:993502/1‑150 (MQ=255) cGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACCCACCAGCACCGCGCTGTTGGATAACCGTGCCAgcg > 1:1118251/1‑150 (MQ=255) cGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACCCACCAGCACCGCGCTGTTGGATAACCGTGCCAgcg > 1:434859/1‑150 (MQ=255) ggCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGCAGCTGGCCACACCCACCAGCACCGCGCTGTTGGATAACCGTGCCAgcgc < 2:544248/150‑1 (MQ=255) gcTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACCCACCAGCACCGCGCTGTTGGATAACCGTGCCAGCgcggc < 1:387554/150‑1 (MQ=255) tGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACCCACCAGCACCGCGCTGTTGGATAACCGTGCCAGCGcggcgg > 1:154603/1‑150 (MQ=255) gggTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACCCACCAGCACCGCGCTGTTGGATAACCGTGCCAGCGCGGCGGCAAAGCCGag < 2:200832/150‑1 (MQ=255) ggTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTTGGCGAACAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACCCACCAGCACCGCGCTGTTGGATAACCGTGCCAGCGCGGCGGCAAAGCCGagc > 1:810621/1‑150 (MQ=255) cAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACCCACCAGCACCGCGCTGTTGGATAACCGTGCCAGCGCGGCGGCAAAGCCGAGCAGCAc > 1:1072317/1‑150 (MQ=255) aGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGAGCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACCCACCAGCACCGCGCTGTTGGATAACCGTGCCAGCGCGGCGGCAAAGCCGAGCAGCACg > 1:821901/1‑150 (MQ=255) ggCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACCCACCAGCACCGCGCTGTTGGATAACCGTGCCAGCGCGGCGGCAAAGCCGAGCAGCACgg > 1:359145/1‑150 (MQ=255) cACCCGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGAt < 1:225025/39‑1 (MQ=255) cACCCGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGAt > 2:784650/1‑39 (MQ=255) cACCCGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGAt < 1:784650/39‑1 (MQ=255) cACCCGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGAt > 2:225025/1‑39 (MQ=255) | GCATGCCCAGCGCCAATGCTGCTTCACGTTGCCCACGGGCCACGCCGAGGATGCCGGCGCGGAAGATCTCGCTCAGGTAGGCCCCGTAGTTCAGCGACAAGGCAATGATGCCGGCGCTGATGGCGCCGGGTACCAGGCCCACCTGCGGCAGCCCCAGGTAGATCAGCAGAATCTGGATCAGCAGCGGCGTGCCACGGAAGAACGAGGTGTAGAAGCTGGCCACACCCACCAGCACCGCGCTGTTGGATAACCGTGCCAGCGCGGCGGCAAAGCCGAGCAGCACGG > NC_002947/763983‑764267 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |