| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 109,962 | G→T | 8.3% | intergenic (+25/‑19) | PP_0103 → / → ctaD | cytochrome c oxidase subunit 2/cytochrome c oxidase subunit 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 109,962 | 0 | G | T | 8.3% | 145.5 / 2.7 | 49 | intergenic (+25/‑19) | PP_0103/ctaD | cytochrome c oxidase subunit 2/cytochrome c oxidase subunit 1 |
| Reads supporting (aligned to +/- strand): ref base G (17/27); new base T (2/2); total (20/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.85e-01 | |||||||||||
AGCAGCTGTCGGAAGTCGACATCGCTGCTGTAGTCACCTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTT > NC_002947/109813‑110107 | agcagcTGTCGGAAGTCGACATCGCTGCTGTAGTCACCTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATg < 1:109322/150‑1 (MQ=255) gTCGGAAGTCGACATCGCTGCTGTAGTCACCTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGCAGCCGTCACAAGCTAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCa < 2:710777/150‑1 (MQ=255) tCGACATCGCTGCTGTAGTCACCTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAg < 2:323507/150‑1 (MQ=255) gACATCGCTGCTGTAGTCACCTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGa < 2:540705/150‑1 (MQ=255) gACATCGCTGCTGTAGTCACCTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGa < 2:821713/150‑1 (MQ=255) gACATCGCTGCTGTAGTCACCTACGAGCGCAATGCCTGGGACAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCCGAAGCCAAGTGAACCGGGTTACTCCCAGAAGACCAGAGATTGCAGGAGACAGGa > 2:257178/1‑150 (MQ=255) tgctgTAGTCACCTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTg > 1:559381/1‑150 (MQ=255) ctgTAGTCACCTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCa < 1:878179/150‑1 (MQ=255) gTAGTCACCTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGt < 2:1070975/150‑1 (MQ=255) gTAGTCACCTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGt < 1:685207/150‑1 (MQ=255) tAGTCACCTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTg > 1:541375/1‑150 (MQ=255) tCACCTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATc < 2:373287/150‑1 (MQ=255) aCCTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAg < 2:694631/123‑1 (MQ=255) aCCTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAg > 1:694631/1‑123 (MQ=255) ccTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATcgac < 1:538028/150‑1 (MQ=255) ccTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATcgac < 2:559381/150‑1 (MQ=255) ccTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATcgac < 1:305568/150‑1 (MQ=255) cTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATcgacg > 2:36534/1‑150 (MQ=255) aGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCAc < 2:603601/150‑1 (MQ=255) gCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGACCACgg < 1:535161/150‑1 (MQ=255) aacaaAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACa > 2:234976/1‑102 (MQ=255) aacaaAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACa < 1:234976/102‑1 (MQ=255) aacaaAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGt > 1:788142/1‑112 (MQ=255) aacaaAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGt < 2:788142/112‑1 (MQ=255) acaaAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCAAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATgcg > 2:942564/1‑150 (MQ=255) aaGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCAc < 1:692542/150‑1 (MQ=255) ggTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCa > 1:727968/1‑150 (MQ=255) tGCTGGCGCAGAAGCAGGCAGAAGACAAGTGAACCGGGTTACTCGCGACAATAAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCATGATGCGCTgg < 2:541375/150‑1 (MQ=255) gCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTggg < 2:727968/150‑1 (MQ=255) tGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGacc > 1:537199/1‑150 (MQ=255) gcaggcagAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGAccacca > 2:153871/1‑150 (MQ=255) gcaggcagAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGAccacca > 2:155781/1‑150 (MQ=255) aggcagAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCaccaac < 2:895590/150‑1 (MQ=255) gcagAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCaccaa > 1:1108096/1‑147 (MQ=255) gcagAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCaccaa < 2:1108096/147‑1 (MQ=255) aaGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATaaa < 2:537199/150‑1 (MQ=255) aaCCGGGTTACTCGCGGCAATCAATGGATTGAAGGAGACAGGACATAAGTACAGTGAGCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCa > 1:415148/1‑150 (MQ=255) gggTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCaa > 1:988428/1‑99 (MQ=255) gggTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCaa < 2:988428/99‑1 (MQ=255) ggTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGAt < 2:1129226/107‑1 (MQ=255) ggTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGAt > 1:1129226/1‑107 (MQ=255) tCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCtg > 2:684590/1‑150 (MQ=255) tCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCtg < 1:36534/150‑1 (MQ=255) tcctgCAATCCATTGATTGCCGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGa < 1:850032/110‑1 (MQ=255) tcctgCAATCCATTGATTGCCGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGa > 2:850032/5‑114 (MQ=255) gcgGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCtgtg > 2:917891/1‑150 (MQ=255) ctgCAATCCATTGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGac > 2:213109/3‑113 (MQ=255) ctgCAATCCATTGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGac < 1:213109/111‑1 (MQ=255) atcaatGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAg < 1:942564/150‑1 (MQ=255) caatGGATTGCAGGAGACAGGTCATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCCGCCACGCGCCTGATGCCCTAGCTGCTGACCACCAACCATAAAGACATCTGCACGATGTACCTGTGGTTCAGtt < 2:49654/150‑1 (MQ=255) | AGCAGCTGTCGGAAGTCGACATCGCTGCTGTAGTCACCTACGAGCGCAATGCCTGGGGCAACAACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTT > NC_002947/109813‑110107 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |