| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,068,194 | A→T | 11.1% | intergenic (‑96/+25) | plsC ← / ← PP_1845 | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,068,194 | 0 | A | T | 11.1% | 90.7 / 5.2 | 36 | intergenic (‑96/+25) | plsC/PP_1845 | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein |
| Reads supporting (aligned to +/- strand): ref base A (16/16); new base T (2/2); total (18/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.56e-01 | |||||||||||
GAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTCC > NC_002947/2068056‑2068333 | gAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCTTGCCCGCGaaa < 1:940758/150‑1 (MQ=255)gAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGaaa > 2:725875/1‑150 (MQ=255) cccAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGc > 1:337801/1‑150 (MQ=255) cagGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTGGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTa < 2:499764/150‑1 (MQ=255) agGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAg < 1:725875/150‑1 (MQ=255) cAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATAtgctg < 2:573764/150‑1 (MQ=255) gAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGa < 1:905344/150‑1 (MQ=255) aTAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAACGGGCCCGTGCGGCTAGCCAATATGCTGCTGATc > 1:668197/1‑150 (MQ=255) cTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGc > 1:458237/1‑92 (MQ=255) cTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGc < 2:458237/92‑1 (MQ=255) ccAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGCAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAgc < 1:26268/150‑1 (MQ=255) aCGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCt < 2:668197/150‑1 (MQ=255) tACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAgg > 1:1017233/1‑76 (MQ=255) tACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAgg < 2:1017233/76‑1 (MQ=255) tACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCa < 2:521334/127‑1 (MQ=255) tACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCa > 1:521334/1‑127 (MQ=255) gggTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACt > 1:582842/1‑150 (MQ=255) gctggGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGgtg > 2:590251/1‑150 (MQ=255) ggggCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCACGCCCGCGAAAAGGGCCCGTGCGGCTAGCCCATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTc < 1:74620/150‑1 (MQ=255) gCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCaa > 1:195332/1‑73 (MQ=255) gCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCaa < 2:195332/73‑1 (MQ=255) gCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTg > 1:1029003/1‑141 (MQ=255) gCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTg < 2:1029003/141‑1 (MQ=255) ccTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTgcgc > 1:934972/1‑150 (MQ=255) ttGNTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCa > 2:703412/1‑150 (MQ=255) ttGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCa < 2:589003/150‑1 (MQ=255) tGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTACAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCAt > 1:966778/1‑150 (MQ=255) aGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGtt < 1:746502/150‑1 (MQ=255) gCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCa > 1:728197/1‑150 (MQ=255) ggCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCa < 1:590251/150‑1 (MQ=255) gCCCTTTCGCGGGCAAGCCCGCAAAAACGGCGCGTGGGGCTAGGCAGGAGGCTGCTGATCCAACTCGATCGACTTGTCCAGCGCCTCCAGCAGCCCTTTGCGGTCTTTCAGCTCGGTGTTCTTTGGCGCCAGCCTGTTCAGCCGCTTCAg > 2:330927/1‑150 (MQ=255) ttttCGCGGGCTTGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTc > 1:696338/2‑118 (MQ=255) ttttCGCGGGCTTGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTc < 2:696338/117‑1 (MQ=255) ttttCGCGGGCTTGCCCGCG‑AAGGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCCGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGGTCAGCTTCTTCAGCTcc > 1:898970/2‑150 (MQ=255) tttCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCtt > 2:58210/1‑110 (MQ=255) tttCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCtt < 1:58210/110‑1 (MQ=255) | GAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTCC > NC_002947/2068056‑2068333 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |