Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,720,807 | T→A | 8.7% | intergenic (+18/+32) | PP_2380 → / ← PP_2381 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,720,807 | 0 | T | A | 8.7% | 138.6 / 4.2 | 46 | intergenic (+18/+32) | PP_2380/PP_2381 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (24/18); new base A (2/2); total (26/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.36e-01 |
TCTGACCCTGACCATCGAGGATGCCAAGGGCGCCAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGATCTTGCCGGCGGCG > NC_002947/2720669‑2720953 | tctGACCCTGACCATCGAGGATGCCAAGGGCGCCAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAgcggccct < 2:953653‑M2/150‑9 (MQ=255) cctgaccATCGAGGATGCCAAGGGCGCCAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGTCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGAGGCCcttttctt > 2:62403/1‑150 (MQ=255) ctgaccATCGAGGATGCCAAGGGCGCCAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCcgtttcttt > 1:622484/1‑150 (MQ=255) cGAGGATGCCAAGCGCGCCAAGGAAACCCTGGAAGTTCAGGTACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTgc < 1:650073/150‑1 (MQ=255) gAGGATGCCAAGGGCGCCAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTgcg > 2:351740/1‑150 (MQ=255) ggATGCCAAGGGCGCCAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGcc < 1:117798/150‑1 (MQ=255) cAAGGGCGCCAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAg > 1:598953/1‑150 (MQ=255) cAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAg < 1:134131/150‑1 (MQ=255) aaGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGCTGAACcggccctttgatctgtcagtggttcat < 2:999894‑M2/136‑28 (MQ=255) aaGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGCTGAACcggccctttgatctgtcagtggttcat > 1:999894‑M2/1‑109 (MQ=255) cccTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAg < 2:598953/150‑1 (MQ=255) ccTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGc > 2:1047949/1‑150 (MQ=255) cTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCg > 2:776891/1‑150 (MQ=255) cTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCg < 1:776891/150‑1 (MQ=255) gTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGt > 1:843120/1‑150 (MQ=255) ggCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAgg < 1:953653/150‑1 (MQ=255) acaAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTc > 2:241273/1‑150 (MQ=255) acaAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTc > 2:1059015/1‑150 (MQ=255) gcTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAgg < 1:474092/150‑1 (MQ=255) tCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAg > 2:816727/1‑132 (MQ=255) tCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAg < 1:816727/132‑1 (MQ=255) tCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGt > 2:659669/1‑150 (MQ=255) aCGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCtt > 2:519014/1‑150 (MQ=255) aCGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCtt > 1:706370/1‑150 (MQ=255) ccGACGTGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCCGGGTCTTGCg > 2:656949/1‑150 (MQ=255) tggtggGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGCTGAACcggccctttgatct < 2:638961‑M2/70‑15 (MQ=255) tggtggGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGCTGAACcggccctttgatct > 1:638961‑M2/1‑56 (MQ=255) cATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCgg > 2:1020525/1‑150 (MQ=255) catgcacatgAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGt < 2:706370/150‑1 (MQ=255) catgcacatgAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGt < 2:745284/150‑1 (MQ=255) catgAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCcttttctttt > 1:211132/1‑50 (MQ=255) catgAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCcttttctttt < 2:211132/50‑1 (MQ=255) cACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAg > 2:765831/1‑150 (MQ=255) aCAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCgg > 1:798280/1‑150 (MQ=255) cAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTATGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGa < 1:351740/150‑1 (MQ=255) aGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTgg < 2:484130/112‑1 (MQ=255) aGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTgg > 1:484130/1‑112 (MQ=255) aTCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAg < 1:888207/79‑1 (MQ=255) aTCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAg > 2:888207/1‑79 (MQ=255) aTCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGATCt > 2:436803/1‑150 (MQ=255) aaaGGGCCGC‑GTTCAgcggccctttgatctgtcagtggttcatgtgcatgtgatcatgcccaccacccgcgtcggcgttgagcgcacgcacttgtgcctgaacttccagggtttccttggcgcccttggcatcctcgatggtcagggtca < 2:930660‑M2/150‑136 (MQ=255) aaaGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGACCCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGATCTTGc > 1:628062/1‑150 (MQ=255) aaaGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGATCTTGc > 1:420583/1‑150 (MQ=255) aaaGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGATCTTGc < 1:659669/150‑1 (MQ=255) aaaGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGATCTTGc > 1:329363/1‑150 (MQ=255) gc‑gTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGATCTTGCcggcggcg < 2:954171/150‑1 (MQ=255) | TCTGACCCTGACCATCGAGGATGCCAAGGGCGCCAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGATCTTGCCGGCGGCG > NC_002947/2720669‑2720953 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |