Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,948,640 T→G 8.8% D162A (GAC→GCC) ‡ PP_2582 ← heme oxygenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,948,6400TG 8.8% 137.4 / 7.1 57D162A (GAC→GCC) ‡PP_2582heme oxygenase
Reads supporting (aligned to +/- strand):  ref base T (24/28);  new base G (2/3);  total (26/31)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.68e-01

GGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGACGTTGCGTGTGCTTGTAGAGAAACGCCGCCCCCAGGTTCGAACCTT  >  NC_002947/2948494‑2948778
                                                                                                                                                  |                                                                                                                                          
ggTGCTGTGCAGCACCCGCTAACGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGACCGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCa                                                                                                                                         <  2:852396/150‑1 (MQ=255)
       tgCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGGACAGCCTggt                                                                                                                                  <  1:503428/150‑2 (MQ=255)
            caCCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGcaacaa                                                                                                                             >  2:16726/1‑150 (MQ=255)
             aCCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACaaa                                                                                                                            >  1:1117662/1‑150 (MQ=255)
               ccGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAAtt                                                                                                                          <  1:787470/150‑1 (MQ=255)
                    aaaGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCgcgc                                                                                                                     <  2:867695/150‑1 (MQ=255)
                           ccATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCa                                                                                                              <  2:934463/150‑1 (MQ=255)
                           ccATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAAGTTCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCa                                                                                                              >  1:396871/1‑150 (MQ=255)
                                    tCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTg                                                                                                                                    >  2:995754/1‑119 (MQ=255)
                                    tCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTg                                                                                                                                    <  1:995754/119‑1 (MQ=255)
                                    tCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAACGCTCGGc                                                                                                     >  1:71330/1‑150 (MQ=255)
                                        tCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCGGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTTGCAACAAATTCGCGCCAATGCAGCGCGCGGCCATc                                                                                                 <  2:264861/150‑1 (MQ=255)
                                            ctgcctgcAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCgcgc                                                                                                                     >  1:419051/1‑126 (MQ=255)
                                            ctgcctgcAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCgcgc                                                                                                                     <  2:419051/126‑1 (MQ=255)
                                                  gcAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAggg                                                                                       <  1:505962/150‑1 (MQ=255)
                                                          cTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTg                                                                               >  2:192641/1‑150 (MQ=255)
                                                          cTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTg                                                                               >  1:786819/1‑150 (MQ=255)
                                                          cTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTACCTATTCACCAGGCTGTCCAGCCTGGCAACCAATCAGCGCAAAGACAGGGCGCGGCCATCCGGGTGAGGGGCCAGGTg                                                                               >  1:519102/1‑150 (MQ=255)
                                                           tCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTgg                                                                              >  1:378018/1‑150 (MQ=255)
                                                                 aGATGCACCCGATAACTGTCGAACGCCGCCATCGCACCCGCGAACACCGCTGCTTCCTCCTGCTCCCCCAGCATCATTCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGcc                                                                        <  1:805109/150‑1 (MQ=255)
                                                                        cccGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGt                                                                 >  1:95693/1‑150 (MQ=255)
                                                                         ccGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTc                                                                >  1:1072470/1‑150 (MQ=255)
                                                                          cGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTNTCa                                                               <  2:697720/150‑1 (MQ=255)
                                                                            aTAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGccc                                                                       >  2:446836/1‑140 (MQ=255)
                                                                            aTAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGccc                                                                       <  1:446836/140‑1 (MQ=255)
                                                                                  gTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAg                                                       >  2:288490/1‑150 (MQ=255)
                                                                                     gAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGTCTGGCAACAAATTCGCGCCAATGTAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGccc                                                    <  2:323140/150‑1 (MQ=255)
                                                                                     gAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCgg                                                                                              >  1:783103/1‑108 (MQ=255)
                                                                                     gAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCgg                                                                                              <  2:783103/108‑1 (MQ=255)
                                                                                      aaCGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGt                                                                                            >  2:153729/1‑109 (MQ=255)
                                                                                      aaCGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGt                                                                                            <  1:153729/109‑1 (MQ=255)
                                                                                      aaCGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCACCCGCACCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGTGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCa                                                   >  2:1002793/1‑150 (MQ=255)
                                                                                       gcGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCCATGCAGCGCGCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCaa                                                  <  2:53750/149‑1 (MQ=255)
                                                                                         gCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCCTCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGa                                                >  2:967525/1‑150 (MQ=255)
                                                                                                       cGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGACGTTGCGTGTGCtt                                  <  2:1072470/150‑1 (MQ=255)
                                                                                                        gCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGTCGTTGCGTGTGCTTg                                 <  2:786819/150‑1 (MQ=255)
                                                                                                          tACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGACGTTGCGTGTGCTTGTa                               <  1:288490/150‑1 (MQ=255)
                                                                                                            ccaccTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGa                                                >  2:457697/1‑131 (MQ=255)
                                                                                                            ccaccTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGACGTTGCGTGTGCTTGTaga                             <  1:404588/150‑1 (MQ=255)
                                                                                                            ccaccTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATGCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGa                                                <  1:457697/131‑1 (MQ=255)
                                                                                                              accTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGACGTTGCGTGTGCTTGTAgaga                           >  1:755677/1‑150 (MQ=255)
                                                                                                                    gCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGACGTTGCGTGTGCTTGTAGAGAAAcgcc                     <  2:659617/150‑1 (MQ=255)
                                                                                                                    gCTTCCCCCCGCTCCCCCAGCACCAGGCTGTCCCGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGACGTTGCGTGTGCTTGTAGAGAAAcgcc                     <  2:396871/150‑1 (MQ=255)
                                                                                                                           cctGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGACGTTGCGTGTGCTTGTAGAGAAACGCCGccccat              <  2:519102/150‑3 (MQ=255)
                                                                                                                           cctGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGACGTTGCGTGTGCTTGTAGAGAAACGCCGCCCCCa              <  2:378018/150‑1 (MQ=255)
                                                                                                                             tGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGACGTTGCGTGTGCTTGTAGAGAAACGCCGCCCCCAgg            >  1:218764/1‑150 (MQ=255)
                                                                                                                                ccccccAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCACCGCTCGCCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGACGTTGCGTGTGCTTGTAGAGAAACGCCGCCCCCAGGTTc         <  1:16726/149‑1 (MQ=255)
                                                                                                                                  ccccAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCAtt                                                                   >  2:1034048/1‑90 (MQ=255)
                                                                                                                                  ccccAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCAtt                                                                   <  1:1034048/90‑1 (MQ=255)
                                                                                                                                   cccAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGAGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGACGTTGCGTGTGCTTGTAGAGAAACGCCGCCCCCAGGTTCGaa      >  2:639829/1‑150 (MQ=255)
                                                                                                                                    ccAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGACGTTGCGTGTGCTTGTAGAGAAAcgcc                     <  2:124135/134‑1 (MQ=255)
                                                                                                                                    ccAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGACGTTGCGTGTGCTTGTAGAGAAAcgcc                     >  1:124135/1‑134 (MQ=255)
                                                                                                                                       gCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGACGTTGCGTGTGCTTGTAGAGAAACGCCGCCCCCAGGTTCGAACCtt  <  2:43627/150‑1 (MQ=255)
                                                                                                                                         gccAGGCTGGACAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCAtt                                                                   >  2:59276/2‑83 (MQ=255)
                                                                                                                                         gccAGGCTGGACAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCAtt                                                                   <  1:59276/82‑1 (MQ=255)
                                                                                                                                          ccAGGCTGGACAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCAtt                                                                   >  2:602300/1‑82 (MQ=255)
                                                                                                                                          ccAGGCTGGACAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCAtt                                                                   <  1:602300/82‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                          
GGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTCCAGCCTGGCAACAAATTCGCGCCAATGCAGCGCTCGGCCATCCGGGTGAGGGGCCAGGTGGCGGGCCCCATTGTCACCCTCCAGCCCAAGACGTTGCGTGTGCTTGTAGAGAAACGCCGCCCCCAGGTTCGAACCTT  >  NC_002947/2948494‑2948778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑