Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,030,150 | G→T | 13.5% | intergenic (+107/‑587) | pcaY → / → mgtA | aromatic acid chemoreceptor/ATP‑dependent magnesium transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,030,150 | 0 | G | T | 13.5% | 99.1 / 7.0 | 37 | intergenic (+107/‑587) | pcaY/mgtA | aromatic acid chemoreceptor/ATP‑dependent magnesium transporter |
Reads supporting (aligned to +/- strand): ref base G (21/11); new base T (3/2); total (24/13) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 |
TGACGGCGTTGGTGGGGCGGTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCGCGCCAGA > NC_002947/3030012‑3030287 | tgccGGCGTTGGTGGGGCGGTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCtttt < 1:621123/147‑1 (MQ=255) gTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAAtt < 2:167267/150‑1 (MQ=255) aaGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGCGCTCGGGGcggt < 2:255577/125‑4 (MQ=255) aaGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGCGCTCGGGGcggt > 1:255577/1‑122 (MQ=255) ggTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATgg < 1:285348/150‑1 (MQ=255) gTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGa > 2:721140/1‑150 (MQ=255) gTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGa > 1:75497/1‑150 (MQ=255) ccTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCtcgtcg > 1:819709/1‑150 (MQ=255) cTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGc > 1:493461/1‑150 (MQ=255) ttAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACctct > 1:1052366/1‑150 (MQ=255) aTAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATAGTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCACTGGACACACTATCTCGTCGCTGCCTGACCTCTTCCGa > 1:473293/1‑150 (MQ=255) gTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGc > 2:842177/1‑150 (MQ=255) gTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGc > 1:831558/1‑150 (MQ=255) ttAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCa < 1:260532/106‑1 (MQ=255) ttAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCa > 2:260532/1‑106 (MQ=255) aaCTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCATGACCTCTGCCGAATGGCCTgg > 2:559260/1‑150 (MQ=255) aCTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGt > 1:146016/1‑150 (MQ=255) tAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCAc < 2:819709/150‑1 (MQ=255) ccTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCgg > 1:1076576/1‑150 (MQ=255) ggTTGACTCCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCg < 2:904687/150‑1 (MQ=255) ttGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGt > 1:962136/1‑150 (MQ=255) aCTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCCCTTGAATCGTAACACCGGTccc < 2:831558/150‑1 (MQ=255) ttCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCTCTTCACTGAAGACTTCAATGGACACAGTATCTCGTCCCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCgc > 2:99900/1‑149 (MQ=255) tacGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAg < 2:1039922/74‑1 (MQ=255) tacGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAg > 1:1039922/1‑74 (MQ=255) aaTAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCaa > 1:90551/1‑150 (MQ=255) tAAAGTTCTACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTcc > 2:485190/1‑129 (MQ=255) tAAAGTTCTACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTcc < 1:485190/129‑1 (MQ=255) aaaGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCg > 2:802183/1‑124 (MQ=255) aaaGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCg < 1:802183/124‑1 (MQ=255) ttCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCgcgc > 2:585845/1‑150 (MQ=255) ttCGACCGCCCAGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCgcgc > 2:528970/1‑150 (MQ=255) aaggCCCCGCGCTCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCGCGCCaga > 1:836684/4‑150 (MQ=255) aggCCCCGCGCTCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAAcc < 2:474353/104‑1 (MQ=255) aggCCCCGCGCTCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAAcc > 1:474353/3‑106 (MQ=255) cGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCggg < 2:727168/129‑1 (MQ=255) cGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCggg > 1:727168/1‑129 (MQ=255) | TGACGGCGTTGGTGGGGCGGTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCGCGCCAGA > NC_002947/3030012‑3030287 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |