Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,194,256 | C→G | 6.8% | L219L (CTG→CTC) | PP_2802 ← | amino acid permease family protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,194,256 | 0 | C | G | 6.8% | 181.3 / 4.8 | 59 | L219L (CTG→CTC) | PP_2802 | amino acid permease family protein |
Reads supporting (aligned to +/- strand): ref base C (28/27); new base G (2/2); total (30/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.32e-01 |
AGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGCCGACAGCAGCCCGCCAGGGCCGTTGGCCGCCACGATGTAGTGC > NC_002947/3194108‑3194400 | aGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCa > 1:853682/1‑150 (MQ=255) cccGTCCACAAGCTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGa < 2:501113/150‑1 (MQ=255) cacaAGCTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAgcgc < 1:415359/150‑1 (MQ=255) cacaAGCTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAgcgc < 1:675661/150‑1 (MQ=255) caAGCTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGc > 1:1015936/1‑137 (MQ=255) caAGCTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGc < 2:1015936/137‑1 (MQ=255) aGCTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCa > 2:513083/1‑150 (MQ=255) cTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCaaa > 1:169912/1‑150 (MQ=255) cTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCaaa < 2:1109177/150‑1 (MQ=255) tCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCAGCCGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAg > 1:467389/1‑150 (MQ=255) aCGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCa > 2:949100/1‑150 (MQ=255) gggggAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGaa > 2:733057/1‑150 (MQ=255) ggggAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCATCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAAc < 2:1047657/150‑1 (MQ=255) ggggTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTa > 2:930674/1‑150 (MQ=255) gTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAggc > 1:434128/1‑150 (MQ=255) gcgcCAGGCACATGCAGTACGAGGCGCCGACGTAGACCGAACCGCCTATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAgtttg < 1:587794/150‑5 (MQ=255) cgcCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGCTCCAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAggcggc < 1:799858/150‑1 (MQ=255) ggTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATgg < 2:169912/150‑1 (MQ=255) tGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGgcgc > 2:1057538/1‑150 (MQ=255) gTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGc > 2:858924/1‑150 (MQ=255) aCGTAGGCCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCTGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCg > 2:129318/1‑150 (MQ=255) gTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGt < 2:924632/84‑1 (MQ=255) gTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGt > 1:924632/1‑84 (MQ=255) gTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGaa > 1:815497/1‑150 (MQ=255) tAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAg < 2:40060/150‑1 (MQ=255) aCCGAACCGCCGATCAAGGCGACCCGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGa > 2:752886/1‑107 (MQ=255) aCCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCCGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGACGGGc > 1:446221/1‑150 (MQ=255) aCCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGa < 1:752886/107‑1 (MQ=255) aCCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGc < 1:222606/150‑1 (MQ=255) aaCCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCtggtg < 1:403287/137‑1 (MQ=255) aaCCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCtggtg > 2:403287/1‑137 (MQ=255) cgccgATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCt > 1:44421/1‑150 (MQ=255) cgccgATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCt > 1:572688/1‑150 (MQ=255) gccgATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTg > 1:371643/1‑150 (MQ=255) gccgATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTg > 1:896531/1‑150 (MQ=255) cgATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGt < 2:853682/150‑1 (MQ=255) gATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGtt < 1:125182/150‑1 (MQ=255) cAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTgaa < 2:807677/150‑1 (MQ=255) agcagGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTg < 1:971446/150‑1 (MQ=255) cagGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGc < 2:945785/150‑1 (MQ=255) ggATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGCCg > 2:534858/1‑150 (MQ=255) gATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGCCGa < 1:930674/150‑1 (MQ=255) cgcgcgGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGCCGAcagca < 1:995474/150‑1 (MQ=255) gcgcgGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGCCGAcagcag > 2:285887/1‑150 (MQ=255) ggCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGCCGACAGCAGCCCGCCAGGGCCGt < 2:815497/150‑1 (MQ=255) gCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGCCGACAGCCGCCCGCCAGGGCCGtt > 2:868337/1‑150 (MQ=255) ccAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGCCGACAGCAGCCCGCCAGGGCCGTTg > 1:1095863/1‑150 (MQ=255) ccAGGGTCGCGGGTTTCCTCGCTCAGCCTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGCCGACAGCAGCCCGCCAGGGCCGTTg < 2:590505/150‑1 (MQ=255) cgcgGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGCCGACAGCAGCCCGCCAGGGCCGTTGGCCGCCa < 2:467389/150‑1 (MQ=255) ggTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGCCGACAGCAGCCCGCCAGGGCCGTTGGCCGCCACGAt < 1:264646/150‑1 (MQ=255) tccacGCTGAGCGAGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGCCGAcagca < 2:700919/114‑1 (MQ=255) tccacGCTGAGCGAGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGCCGAcagca < 2:700938/114‑1 (MQ=255) tCCACGCTGAGCGAGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGCCGAcagca > 1:700938/1‑118 (MQ=255) tCCACGCTGAGCGAGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGCCGAcagca > 1:700919/1‑118 (MQ=255) cTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGc > 2:643803/1‑108 (MQ=255) cTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGc < 1:643803/108‑1 (MQ=255) tCGCTCAGCGTGGACAGCGCGTCAAAGCCCATGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGCCGACAGCAGCCCGCCAGGGCCGTTGGCCGCCACGATGTAGTgc > 2:574392/1‑150 (MQ=255) tCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTga > 2:846462/1‑94 (MQ=255) tCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTga < 1:846462/94‑1 (MQ=255) | AGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGCGACCAGCAGGATGGCGCGCGGCAGCGTGCGGCCAGGGTCGCGGGTTTCCTCGCTCAGCGTGGACAGCGCGTCAAAGCCCAGGAACGAGTAGGCGGCGATGGCGGCGCCGGCCATGCTGGTGGCGAAGGGCACGTCCTGGTTGAAGAACGGCTTGGCCGACAGCAGCCCGCCAGGGCCGTTGGCCGCCACGATGTAGTGC > NC_002947/3194108‑3194400 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |