Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,316,686 | C→T | 7.5% | A242V (GCC→GTC) | PP_3788 → | non‑ribosomal peptide synthetase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,316,686 | 0 | C | T | 7.5% | 146.6 / 2.6 | 53 | A242V (GCC→GTC) | PP_3788 | non‑ribosomal peptide synthetase |
Reads supporting (aligned to +/- strand): ref base C (21/28); new base T (2/2); total (23/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.26e-01 |
TTACGCGCTCGGCAGCGAAGATGTCACGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGCAATCAATGCCTGCCAGCACCTCAGGCATATCGTTTGCTGCGGAGAACCTTGGGGAGTTGAGT > NC_002947/4316537‑4316823 | ttACGCGCTCGGCAGCGAAGATGTCACGGCCCTGAAAACCCCGGCCTCATTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGc > 2:156816/1‑150 (MQ=255) ttACGCGCTCGGCAGCGAAGATGTCACGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGc < 1:675896/150‑1 (MQ=255) ggCAGCGAAGATGTCACGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCt > 1:1054764/1‑150 (MQ=255) ggCAGCGAAGATGTCACGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCt < 2:724923/150‑1 (MQ=255) ggCAGCGAAGATGTCACGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCt < 2:726587/150‑1 (MQ=255) aGCGAAGATGTCACGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCt < 1:955600/139‑1 (MQ=255) aGCGAAGATGTCACGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCt > 2:955600/1‑139 (MQ=255) gAAGATGTCACGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCAc > 2:412996/1‑150 (MQ=255) caaGACGTCACAGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCTTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCAc < 2:95696/149‑1 (MQ=255) aaGATGTCACGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTACTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACg < 2:660088/150‑1 (MQ=255) gATGTCACGGCCCTGAAAACCCAGTCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTTAGCACGgt < 2:1077357/150‑1 (MQ=255) gATGTCACGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGgt < 2:723615/150‑1 (MQ=255) gATGTCACGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGgt < 1:649170/150‑1 (MQ=255) gTCACGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTc < 2:1054764/150‑1 (MQ=255) tCACGGCCCTGAAAACCCAGGCCTCGTTCGGCCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCa < 2:32900/150‑1 (MQ=255) cACGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCAc < 2:54391/150‑1 (MQ=255) aCGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGTCTGCATCGCTGAGCACGGTGTCAcc > 1:718674/1‑150 (MQ=255) aCGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGTCTGCATCGCTGAGCACGGTGTCAcc > 1:162657/1‑150 (MQ=255) cGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGTCTGCATCGCTGAGCACGGTGTCACCa < 2:718674/150‑1 (MQ=255) cGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGTCTGCATCGCTGAGCACGGTGTCACCa < 2:162657/150‑1 (MQ=255) ggCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGGCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGGCCGGTGTCACCAt > 2:603620/1‑150 (MQ=255) ccTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCt > 1:970815/1‑150 (MQ=255) ccTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCt < 2:161385/150‑1 (MQ=255) tGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGcc > 2:948557/1‑119 (MQ=255) tGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGcc < 1:948557/119‑1 (MQ=255) tGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCtca > 1:897500/1‑150 (MQ=255) aaaaCCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCATGGTGACACCGTGCtcagc < 2:1040988/150‑3 (MQ=255) gCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTAccc > 1:380552/1‑150 (MQ=255) cTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTACCAATTACCTGGCGGCTTGCTTCTCTGATTACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTgcagca > 2:678692/1‑150 (MQ=255) tCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCAt < 2:895004/150‑1 (MQ=255) gaggCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGcc > 2:190929/1‑150 (MQ=255) ggCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAg > 2:1100356/1‑150 (MQ=255) tgctgcCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCgg < 1:163228/150‑1 (MQ=255) ccTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGcaatc < 1:412996/150‑1 (MQ=255) ccTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGcaatc > 1:208692/1‑150 (MQ=255) ttttttttCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCa < 1:35221/117‑1 (MQ=255) ttttttttCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCa > 2:35221/1‑117 (MQ=255) ttttttttCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGcaatcaa < 2:208692/150‑1 (MQ=255) ttttttttCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGcaatcaa > 1:764685/1‑150 (MQ=255) ttttttttCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTACATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTgcagc > 2:850110/1‑125 (MQ=255) ttttttttCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTACATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTgcagc < 1:850110/125‑1 (MQ=255) tttCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGCAATCAAtgcct < 2:1069737/150‑1 (MQ=255) tCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGCAATCAAtgcctgc < 1:156816/150‑1 (MQ=255) cgccgGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGCAATCAATGCCTGCCa < 1:1100356/150‑1 (MQ=255) gcCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGcaatcaat < 2:497748/135‑1 (MQ=255) gcCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGcaatcaat > 1:497748/1‑135 (MQ=255) aCCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGCAATCAATGCCTGCCAGCACCTCAGGCATATCGTTtgct > 2:234665/1‑150 (MQ=255) cacaACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGCAATCAATGCCTGCCAGCACCTCAGGCATATCGTTtgctgc > 1:707523/1‑150 (MQ=255) cacaACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGCAATCAATGCCTGCCAGCACCTCAGGCATATCGTTtgctgc < 2:897500/150‑1 (MQ=255) cacaACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGCAATCAATGCCTGCCAGCACCTCAGGCATATCGTTtgctgc > 1:551549/1‑150 (MQ=255) gcaACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGCAATCAATGCCTGCCAGCACCTCAGGCATATCGTTTGCTGCg > 1:588301/2‑150 (MQ=255) tCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGCAATCAATGCCTGCCAGCACCTCAGGCATATCGTTTGCTGCGGAGAACCtt > 2:251863/1‑150 (MQ=255) aatcTTTCCCAAGCACCTGTCTGCCTACACCGCCGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCATAATCTTCTCGCCAGCCCGGCAATCAATGCCTGCCAGCACCTCAGGCATATCGTTTGCTGCGGAGAACCTTg < 1:76937/147‑1 (MQ=255) tttCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGCAATCAATGCCTGCCAGCACCTCAGGCATATCGTTTGCTGCGGAGAACCTTGGGga < 1:678692/150‑1 (MQ=255) cccAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCCCCCTCAACATCCTACTTCGCCACCAGCAGCATCTTCTCGCCAGCCCGTCAATTGATGCGTGCCATCACCTCAGGCATATCGTTTGCTGCGGAGAACCTTGGGgagtt < 2:970815/150‑1 (MQ=255) cAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGCAATCAATGCCTGCCAGCACCTCATGCATATCGTTTGCTGCGGAGAACCTTGGGgagttga > 1:396778/1‑150 (MQ=255) aTTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGCAATCAATGCCTGCCAGCACCTCAGGCATATCGTTTGCTGCGGAGAACCTTGGGgagttgagt < 2:764685/150‑1 (MQ=255) | TTACGCGCTCGGCAGCGAAGATGTCACGGCCCTGAAAACCCAGGCCTCGTTCGACCCCTCGATCCAGGAGGCCGTGCTGCCTTTTTTTTCCGCCGGCGCCGTGTTCGTGCCTGACCACAACCGAGTCAACTTTCCCAATTACCTGTCGGCCTGCATCGCTGAGCACGGTGTCACCATGCTCATCATGGTACCCAGCCACCTGCAGCATCTTCTCGCCAGCCCGGCAATCAATGCCTGCCAGCACCTCAGGCATATCGTTTGCTGCGGAGAACCTTGGGGAGTTGAGT > NC_002947/4316537‑4316823 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |