Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,442,672 | C→G | 12.5% | intergenic (‑98/+40) | nicP‑II ← / ← nicT | porin‑like protein/metabolite transport protein NicT |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,442,672 | 0 | C | G | 12.5% | 131.0 / 11.7 | 48 | intergenic (‑98/+40) | nicP‑II/nicT | porin‑like protein/metabolite transport protein NicT |
Reads supporting (aligned to +/- strand): ref base C (23/19); new base G (4/2); total (27/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.83e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.87e-01 |
AGGCGTGCAGACGAAGAAAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGCCGGTGAGGTCGGT > NC_002947/4442531‑4442819 | aGGCGTGCAGACGAAGAAAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGc < 2:125830/150‑1 (MQ=255) tGCAGACGAAGAAAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGTGCCCGAACAGCCAGGCCAACCGGC‑AGCGTGGTTG‑ATCTAGAGAGGTCGGCAGGCGGGCCCCGGCCCGcctgcc < 1:21247/150‑1 (MQ=255) agaaAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGc > 1:484976/1‑132 (MQ=255) agaaAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGc < 2:484976/132‑1 (MQ=255) aaaaaCGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCg > 1:920127/1‑150 (MQ=255) aCGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGaa < 2:969847/150‑1 (MQ=255) cgcgGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAg < 1:707158/150‑1 (MQ=255) cgcAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACCGATTCCAGTGCCATCGTCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTg < 2:870544/150‑1 (MQ=255) gcAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTgg < 2:209975/150‑1 (MQ=255) aaaCCTTGCATAGGGCTACTCCTGGATTTGGGCAAAAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCt > 1:694370/1‑150 (MQ=255) cTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCg > 2:1026898/1‑150 (MQ=255) aTAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGa > 2:740272/1‑150 (MQ=255) aTAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGa > 1:450493/1‑150 (MQ=255) tAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGAc < 1:740272/150‑1 (MQ=255) cTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTg > 2:814115/1‑128 (MQ=255) cTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTg < 1:814115/128‑1 (MQ=255) tCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGc > 2:5773/1‑150 (MQ=255) tGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCCGGCCCCGGCCCGCCTGCCCTGCCGGTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCgg > 1:23931/1‑150 (MQ=255) tttGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGACTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAg > 2:337886/1‑150 (MQ=255) tctggCAACAGCAACCCGGCGCGGCGGCACTGCATGGAC‑TCCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAgg < 1:10183/147‑1 (MQ=255) gCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCAGGGCCCCTACCGGTTGACCAGCTTGGCCGGCAAGGcaga > 2:10183/1‑147 (MQ=255) aaCAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGa > 2:447063/1‑150 (MQ=255) aaCAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGa > 1:610267/1‑150 (MQ=255) cAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAgg > 1:1125543/1‑150 (MQ=255) cccGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAag < 1:337886/150‑1 (MQ=255) ccGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCCAGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAagc > 1:618862/1‑150 (MQ=255) ggcgcggcgGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAagcag < 2:921800/150‑1 (MQ=255) cggcggCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGa < 1:541341/150‑1 (MQ=255) aCTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCtt > 1:1125963/1‑111 (MQ=255) aCTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCtt < 2:1125963/111‑1 (MQ=255) tGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCAATACCTACAGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAAAAGCTGAGGAACACGc > 2:261982/1‑150 (MQ=255) aTGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGc < 2:333794/150‑1 (MQ=255) tGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGcc < 2:920127/150‑1 (MQ=255) ccGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCaaa > 1:149111/1‑150 (MQ=255) gCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCcac > 1:802469/1‑150 (MQ=255) ttGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCCGGCAGCCGGCAAACACCCAcagcgc < 1:297890/150‑1 (MQ=255) tGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCAcagcgca < 1:5773/150‑1 (MQ=255) aTCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCAcagcgcagcg > 2:171992/1‑150 (MQ=255) gTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGc > 2:1084886/1‑150 (MQ=255) gTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGc > 1:906800/1‑150 (MQ=255) aGGCGGGCCGGGGCCCTCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAacac > 2:839736/1‑121 (MQ=255) aGGCGGGCCGGGGCCCTCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAacac < 1:839736/121‑1 (MQ=255) aGGCGGGCCGGGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCAcagcgcagc < 2:1010458/133‑1 (MQ=255) aGGCGGGCCGGGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCAcagcgcagc > 1:1010458/1‑133 (MQ=255) aGGCGGGCCGGGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGCCGGTGa > 2:1100846/1‑150 (MQ=255) aGGCGGGCCGGGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGCCGGTGa > 2:1028752/1‑150 (MQ=255) aGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATc < 2:675899/104‑1 (MQ=255) aGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATc > 1:675899/1‑104 (MQ=255) ccccGGCCCGCCGGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGCCGGTGAGGTCGGt < 2:610267/150‑1 (MQ=255) | AGGCGTGCAGACGAAGAAAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCC‑ACCGGCGTGCG‑GGTTGCATCGAGAGAGGTCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGCTTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGCCGGTGAGGTCGGT > NC_002947/4442531‑4442819 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |