| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,505,094 | C→A | 8.1% | L52L (CTC→CTA) | tusE → | sulfur transfer protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,505,094 | 0 | C | A | 8.1% | 150.4 / 2.7 | 50 | L52L (CTC→CTA) | tusE | sulfur transfer protein |
| Reads supporting (aligned to +/- strand): ref base C (19/26); new base A (2/2); total (22/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.93e-01 | |||||||||||
CGCTCACCGTTGGCGATCAGGTGATCGCCCTGGACAAGGATGGCTTCCTGGTCGATCTGCAAGATTGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGAAAAGGGCAACAGCCCGCACCTTAACCGCCTGTTCAACGGCACCCCCGCCAAACTTGCC > NC_002947/4504946‑4505232 | cGCTCACCGTTGGCGATCAGGTGATCGCCCTGGACAAGGATGGCTTCCTGGTCGATCTGCAAGATTGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGCTGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTcc < 1:193815/150‑1 (MQ=255) cTCACCGTTGGCGATCAGGTGATCGCCCTGGACAAGGATGGCTTCCTGGTCGATCTGCAAGATTGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGt < 1:1000141/150‑1 (MQ=255) cACCGTTGGCGATCAGGTGATCGCCCTGGACAAGGATGGCTTCCTGGTCGATCTGCAAGATTGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCa < 2:521578/150‑1 (MQ=255) agggCGATCACCTGATCGCCCTGGACAAGGATGGCTTCCTGGTCGATCTGCAAGATTGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCt > 2:677918/3‑150 (MQ=255) cAGGTGATCGCCCTGGACAAGGATGGCTTCCTGGTCGATCTGCAAGATTGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGCCCACTGGGAAATCCTCGAACTGCGCCGGCAGTTCTACCAGGaa < 2:182714/150‑1 (MQ=255) ggTGATCGCCCTGGACAAGGATGGCTTCCTGGTCGATCTGCAAGATTGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATa > 1:1122504/1‑150 (MQ=255) cGCCCTGGACAAGGATGGCTTCCTGGTCGATCTGCAAGATTGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCt < 1:779737/150‑1 (MQ=255) ggATGGCTTCCTGGTCGATCTGCAAGATTGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCAc < 2:280552/150‑1 (MQ=255) tGGCTTCCTGGTCGATCTGCAAGATTGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCAcccg > 1:858253/1‑150 (MQ=255) ttCCTGGTCGATCTGCAAGATTGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCAcccgcccg > 2:847177/1‑150 (MQ=255) ttCCTGGTCGATCTGCAAGATTGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGCCAGtt > 2:709119/1‑113 (MQ=255) ttCCTGGTCGATCTGCAAGATTGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGCCAGtt < 1:709119/113‑1 (MQ=255) tCCTGGTCGATCTGCAAGATTGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACccgcccgc > 2:181972/1‑150 (MQ=255) ccTGGTCGATCTGCAAGATTGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCt < 1:677918/150‑1 (MQ=255) cgcatcttGATCACACGACGCCGCCGAGGCTGTGGCCAAGGGTGAGGGTATCCCGTTGACCGCGGACCACTGGGAATGCCTCGAACTGCTCCGTCAGTATTACCAGGAATACCAGCTGTCGCCGTCCTCCCGCCCGCTGATCAAGTacac < 2:410701/144‑1 (MQ=255) ttGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAg > 1:703408/1‑100 (MQ=255) ttGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAg < 2:703408/100‑1 (MQ=255) ggTCTCACGACGCCGCCGATGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCGCCGGCCACCCGCCCGCTGATCAATTACACGGCCCTCa < 2:296322/150‑1 (MQ=255) gTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCaa > 2:153995/1‑150 (MQ=255) tctcACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAg > 2:338139/1‑150 (MQ=255) cACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTTTTGGGCGGAGATGGTGCGGGTGTGAAATCCGCGAAATGCGCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTg < 1:805629/150‑1 (MQ=255) cACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCGCTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTg > 2:598851/1‑150 (MQ=255) cACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTg < 2:12709/150‑1 (MQ=255) acgacgCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTgt > 1:462373/1‑149 (MQ=255) gacgCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAg > 2:547673/1‑99 (MQ=255) gacgCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAg < 1:547673/99‑1 (MQ=255) acgCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATTCCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGcc < 2:427898/150‑1 (MQ=255) acgCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGcc < 1:338139/150‑1 (MQ=255) cgAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGaaaa < 1:686597/150‑1 (MQ=255) aGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGAAAAgg < 1:989065/150‑1 (MQ=255) gCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGAAAAGGGc < 2:1010180/150‑1 (MQ=255) tttGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGAAAAGGGCaa > 1:1089928/1‑150 (MQ=255) gCCAAGCGCGAGGGTATCCCGTTGACGGCGGAGCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGAAAAGGGCAACAGc > 2:626067/1‑150 (MQ=255) ccAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGAAAAGGGCAACAGcc < 2:441424/150‑1 (MQ=255) cAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGAAAAGGGCAACAGccc < 1:616223/150‑1 (MQ=255) cAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGAAAAGGGCAACAGccc < 1:181972/150‑1 (MQ=255) aaGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGAAAAGGGCAACAGCCCg < 1:377088/150‑1 (MQ=255) cccGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGAAAAGGGCAACAGCCCGCACCTTAACCGCCt < 2:858253/150‑1 (MQ=255) gACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGaa < 2:969997/52‑1 (MQ=255) gACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGaa < 2:399671/52‑1 (MQ=255) gACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGaa > 1:969997/1‑52 (MQ=255) gACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGaa > 1:399671/1‑52 (MQ=255) aaaTCTTCGAACTGCTTCGTCAGTGCTACCAGGAATACCAGCTGTCTCCGGCCACGCACCCGCTGATCAAGTACACGGCCCTCAAGCTACACCCTGCAAAGGGCCACAGCCCGCACCTTAACTGCCTGTTCAACATCCCCCTCGCCacaa > 2:751785/1‑147 (MQ=255) ccTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGAAAAGGGCAACAGCCCGCACCTTAACCGCCTGTTCAACGGCACCCCCGCCAAACTTgc < 1:598851/150‑1 (MQ=255) ccTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCATCAAGCTGGGCCCTGAAAAGGGCAACAGCCCGCACCTTAACCGCCTGTTCAACGGCACCCCCGCCAAACTTgc > 1:826852/1‑150 (MQ=255) cTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGAAAAGGGCAACAGCCCGCACCTTAACCGCCTGTTCAACGGCACCCCCGCCAAACTTgcc > 2:1037322/1‑150 (MQ=255) cTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGAAAATAAAGCTGGGCCCTGAAAAGGGCAACAGCCCGCACCTTAACCGCCTGTTCAACGGCACCCCCGCCAAACTTgcc > 2:821033/1‑150 (MQ=255) cTCGAACTGCTACGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGAAAAggg < 2:481001/98‑1 (MQ=255) cTCGAACTGCTACGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGAAAAggg < 2:480844/98‑1 (MQ=255) cTCGAACTGCTACGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGAAAAggg > 1:481001/1‑98 (MQ=255) cTCGAACTGCTACGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGAAAAggg > 1:480844/1‑98 (MQ=255) | CGCTCACCGTTGGCGATCAGGTGATCGCCCTGGACAAGGATGGCTTCCTGGTCGATCTGCAAGATTGGTCTCACGACGCCGCCGAGGCTTTGGCCAAGCGCGAGGGTATCCCGTTGACGGCGGACCACTGGGAAATCCTCGAACTGCTCCGTCAGTTCTACCAGGAATACCAGCTGTCTCCGGCCACCCGCCCGCTGATCAAGTACACGGCCCTCAAGCTGGGCCCTGAAAAGGGCAACAGCCCGCACCTTAACCGCCTGTTCAACGGCACCCCCGCCAAACTTGCC > NC_002947/4504946‑4505232 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |