Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,002,576 | A→T | 7.9% | I105F (ATT→TTT) | PP_4409 → | site‑specific recombinase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,002,576 | 0 | A | T | 7.9% | 148.9 / 4.7 | 51 | I105F (ATT→TTT) | PP_4409 | site‑specific recombinase |
Reads supporting (aligned to +/- strand): ref base A (25/22); new base T (2/2); total (27/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.18e-01 |
CTTACATAATGCCAACTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAATTGAAA > NC_002947/5002431‑5002717 | cTTACATAATGCCAACTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTg < 2:257256/150‑1 (MQ=255) cTTACATAATGCCAACTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTg < 1:884225/150‑1 (MQ=255) ttACATAATGCCAACTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGc < 2:743432/150‑1 (MQ=255) aTAATGCCAACTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAACCACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGaaa > 2:412774/1‑149 (MQ=255) cTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTc > 2:568752/1‑150 (MQ=255) gACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGGATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATg < 1:568752/150‑1 (MQ=255) gACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACAACCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCCAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATg < 1:757075/150‑1 (MQ=255) cttcGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCTAAGTAAACACCCTGTATCGAGAGTATCACTAATTCACGACAGTTGGCAGCTCCAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAg < 1:135571/150‑1 (MQ=255) ttcGAGGAAGGCCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGc > 1:151371/1‑150 (MQ=255) ttcGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTcc < 2:92014/138‑1 (MQ=255) ttcGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTcc > 1:92014/1‑138 (MQ=255) ttcGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGGAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGc > 2:434903/1‑150 (MQ=255) gaagaaGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACg < 1:83321/150‑1 (MQ=255) aagaagGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTGTCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACgg > 1:357658/1‑150 (MQ=255) aagaagGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACgg > 1:904354/1‑150 (MQ=255) atatTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAat > 1:196860/1‑150 (MQ=255) ttGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATc > 1:401568/1‑150 (MQ=255) aGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACg < 1:1094755/150‑1 (MQ=255) gCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAat < 2:213449/138‑1 (MQ=255) gCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAat > 1:213449/1‑138 (MQ=255) aaGTAAACACCCTGTATCGAGAGTATCACTCACACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCtt > 2:625597/1‑150 (MQ=255) aaaCACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATCCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCt > 2:681156/1‑150 (MQ=255) ccTGTATCGAGAGTATCACTCATACTTGTCAGTTGGCAGCGCGAGCAATTCAACAGGTGTTCGCAAAATTTGCGAAGCTAAACCGTACCCAATGGTAAGGACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAagag > 2:582987/1‑150 (MQ=255) ccTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAagag < 2:196860/150‑1 (MQ=255) tGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAAGAGcc > 2:71436/1‑150 (MQ=255) tCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATCCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTgg < 1:681156/150‑1 (MQ=255) agagTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATg > 2:626183/1‑85 (MQ=255) agagTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATg < 1:626183/85‑1 (MQ=255) agagTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTGGTaa < 1:434903/150‑1 (MQ=255) aCTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATc < 2:107438/91‑1 (MQ=255) aCTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATc > 1:107438/1‑91 (MQ=255) cTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAat > 2:84504/1‑101 (MQ=255) cTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAat < 1:84504/101‑1 (MQ=255) gtACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTc > 1:1062622/2‑145 (MQ=255) aTACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTc < 2:1062622/145‑1 (MQ=255) ttGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCGCACGTCCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATAc > 2:85180/1‑150 (MQ=255) ttGACAGTTGGCAGCGCGAACAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATc < 1:909484/97‑1 (MQ=255) ttGACAGTTGGCAGCGCGAACAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATc > 2:909484/1‑97 (MQ=255) tGGCAGCGCGAGCAATTCAACAGTTGTTCGAAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGacta < 2:357658/150‑1 (MQ=255) cAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTg > 1:735083/1‑150 (MQ=255) aGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGc > 2:1062678/1‑150 (MQ=255) gcgcGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCg > 1:1058704/1‑150 (MQ=255) ttCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACggcat > 2:790427/1‑147 (MQ=255) cAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTgg < 2:604676/150‑1 (MQ=255) aCAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTa > 2:983905/1‑150 (MQ=255) cAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTaa < 1:71436/150‑1 (MQ=255) gttgttCGCAAGATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGCAGAGCCTTGGTAATTACTCCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAAtt < 1:412774/150‑1 (MQ=255) cttCGCAAATTTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTg > 1:457575/2‑128 (MQ=255) cttCGCAAATTTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTg < 2:457575/127‑1 (MQ=255) cttCGCAAATTTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATACCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAATTGaa > 1:582327/2‑150 (MQ=255) ttCGCAAATTTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATACCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAATTGaaa < 2:582327/150‑1 (MQ=255) | CTTACATAATGCCAACTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCGCGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAATTGAAA > NC_002947/5002431‑5002717 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |