Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,029,042 | A→G | 12.1% | intergenic (+71/‑368) | PP_4432 → / → PP_4433 | Xaa‑Pro aminopeptidase/amino acid MFS transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,029,042 | 0 | A | G | 12.1% | 76.4 / 3.4 | 33 | intergenic (+71/‑368) | PP_4432/PP_4433 | Xaa‑Pro aminopeptidase/amino acid MFS transporter |
Reads supporting (aligned to +/- strand): ref base A (14/15); new base G (2/2); total (16/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.86e-01 |
CCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGGTTGAAAGTTGATTGTTCCCCAGGGAGCGAGTCAACCTGTGCCTAACGCCTGAAACTTATCAAGGACGACGCTGAATAGAAGTAATACC > NC_002947/5028895‑5029188 | ccGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGc > 1:662593/1‑150 (MQ=255) agagCATCCTGATAACTGATACTGGGATCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCAcc < 1:1076184/150‑1 (MQ=255) tGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCTTTAAGGCACCAt < 2:787913/143‑1 (MQ=255) tGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCTTTAAGGCACCAt > 1:787913/1‑143 (MQ=255) tGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCa > 1:311737/1‑150 (MQ=255) tGATACTGGGGCCGACACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCCCCATCACTCCAGCCACTc > 2:457801/1‑150 (MQ=255) tACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGCCAATGGCTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCtt < 1:965777/150‑1 (MQ=255) cTGCGGTCGAGACGTTATGAGCGCCTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTg < 2:233283/150‑1 (MQ=255) tGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGt < 2:311737/150‑1 (MQ=255) gCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACg > 2:464400/1‑150 (MQ=255) ctcGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCTTTAAGGCACCATCa < 2:1015223/106‑1 (MQ=255) ctcGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCTTTAAGGCACCATCa > 1:1015223/1‑106 (MQ=255) ctcGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGa > 1:660826/1‑150 (MQ=255) tcGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGaa > 1:84598/1‑150 (MQ=255) cAAGCTTTTCGTCAAGGACTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAagag < 1:842156/150‑1 (MQ=255) aaGCTTTTCGTCAAGGACTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAgg < 2:662593/150‑1 (MQ=255) aCGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGGTTGAAAGTTGATTGTTcccc > 1:118370/1‑150 (MQ=255) cGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGGTTGAAAGTTGATTGTTCCCCa < 2:118370/150‑1 (MQ=255) gAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTaaa < 1:327655/70‑1 (MQ=255) gAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTaaa > 2:327655/1‑70 (MQ=255) gAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCttt < 2:697311/95‑1 (MQ=255) gAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCttt > 1:697311/1‑95 (MQ=255) ttGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGGTTGAAAGTTGATTGTTCCCCAGGGAGCGa < 2:660826/150‑1 (MQ=255) cACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGGTTGAAAGTTGATTGTTCCCCAGGGAGCGAGTCAACCTGTGCCTAACGCCTGaaa < 1:380171/150‑1 (MQ=255) aCGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGGTTGAAAGTTGa > 2:140148/1‑106 (MQ=255) aCGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGGTTGAAAGTTGa < 1:140148/106‑1 (MQ=255) ggCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGGTTGAAAGTTGATTGTTCCCCAGGGAGCGAGTCAACCTGTGCCTAACGCCTGAAACtt > 1:464432/1‑150 (MQ=255) gCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACCGCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGGTTGAAAGTTGATTGTTCCCCAGGGAGCGAGTCAACCTGTGCTTAACGCCTGAGACTTa < 2:911009/150‑1 (MQ=255) cTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGGTTGAAAGTTGATTGTTCCCCAGGGAGCGAGTCAACCTGTGCCTAACGCCTGAAACTTATCAAg > 2:201541/1‑150 (MQ=255) cTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGGTTGAAAGTTGATTGTTCCCCAGGGAGCGAGTCAACCTGTGCCTAACGCCTGAAACTTATCAAg > 1:992795/1‑150 (MQ=255) tCAGCGACAATGGGATGGAGCCTTAAAGCCCCAGCACTGCAGCCCCTGCTATGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGGTTGAAAGTTGATTGTTCCCCAGGGAGCGAGTCAACCTGTGCCTAACGGCTGAAACTTATCAAGga < 2:586121/150‑1 (MQ=255) cAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGGTTGAAAGTTGATTGTTCCCCAGGGAGCGAGTCAACCTGTGCCTAACGCCTGAAACTTATCAAGGACGACGCt > 1:552631/1‑150 (MQ=255) tGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGGTTGAAAGTTGATTGTTCCCCAGGGAGCGAGTCAACCTGTGCCTAACGCCTGAAACTTATCAAGGACGACGCTGAATAGaa < 1:719278/150‑1 (MQ=255) gCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGGTTGAAAGTTGATTGTTCCCCAGGGAGCGAGTCAACCTGTGCCTAACGCCTGAAACTTATCAAGGACGACGCTGAATAGAAGTaa > 1:314070/1‑150 (MQ=255) tAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGGTTGAAAGTTGATTGTTCCCCAGGGAGCGAGTCAACCTGTGCCTAACGCCTGAAACTTATCAAGGACGACGCTGAATAGAAGTAATAcc < 2:552631/150‑1 (MQ=255) | CCGAGAGCATCCTGATCACTGATACTGGGGTCGAGACGTTCTGCTCGACTCCTCGCAAGCTTTTCGTCAAGGACTGACGAAAAGTTTGCAAGTCGCTGGAGTTATAGTGCCACGGCTATCTTCAGCGACAATGTGATGGTGCCTTAAAGCACCATCACTCCAGCCACTCCTTTGTTTTACAAAAAAAGCACGCAGCCTTGAAGAGGTTGAAAGTTGATTGTTCCCCAGGGAGCGAGTCAACCTGTGCCTAACGCCTGAAACTTATCAAGGACGACGCTGAATAGAAGTAATACC > NC_002947/5028895‑5029188 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |