Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,232,102 C→G 11.3% A214A (GCG→GCC PP_4610 ← PepSY‑associated TM helix domain‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,232,1020CG11.3% 178.2 / 13.7 62A214A (GCG→GCCPP_4610PepSY‑associated TM helix domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base C (25/30);  new base G (4/3);  total (29/33)
Fisher's exact test for biased strand distribution p-value = 6.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.69e-01

CCCCCGGCTGCAGCTCCTGCACCTTGGCGTACAGGCTCGGCAGCGCTACCAGCGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTGCCAGGGCGGAAGGTGAAGAACTCCTTGA  >  NC_002947/5231954‑5232247
                                                                                                                                                    |                                                                                                                                                   
cccccGGCTGCAGCTCCTGCACCTTGGCGTACAGGCTCGGCAGCGCTACCAGCGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCccg                                                                                                                                                    >  1:402530/1‑150 (MQ=255)
   ccGGCTGCAGCTCCTGCACCTTGGCGTACAGGCTCGGCAGCGCTACCAGCGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTTCCGTAGCTGGCCATGATGCccgccg                                                                                                                                                 >  2:986258/1‑150 (MQ=255)
          cAGCTCCTGCACCTTGGCGTACAGGCTCGGCAGCGCTACCAGCGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCAc                                                                                                                                          <  1:775619/150‑1 (MQ=255)
                cTGCACCTTGGCGTACAGGCTCGGCAGCGCTACCAGCGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTa                                                                                                                                    <  2:781190/150‑1 (MQ=255)
                   cACCTTGGCGTACAGGCTCGGCAGCGCTACCAGCGGCTTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACAt                                                                                                                                 <  1:846146/150‑1 (MQ=255)
                      cTTGGCGTACAGGCTCGGCAGCGCTACCAGCGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGaa                                                                                                                              >  2:267634/1‑150 (MQ=255)
                        tGGCGTACAGGCTCGGCAGCGCTACCAGCGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑a                                                                                                                          <  2:1109565/150‑1 (MQ=255)
                            gTACAGGCTCGGCAGCGCTACCAGCGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑Ag                                                                                                                         <  2:920871/147‑1 (MQ=255)
                            gTACAGGCTCGGCAGCGCTACCAGCGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑Ag                                                                                                                         >  1:920871/1‑147 (MQ=255)
                             tACAGGCTCGGCAGCGCTACCAGCGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCa                                                                                                                                           >  2:606231/1‑130 (MQ=255)
                             tACAGGCTCGGCAGCGCTACCAGCGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCa                                                                                                                                           <  1:606231/130‑1 (MQ=255)
                              aCAGGCTCGGCAGCGCTTCCAGCGGCGTGGTCACCTGGGCCGACTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGCACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGGACCa                                                                                                                    <  2:395460/150‑1 (MQ=255)
                                aGGCTCGGCAGCGCTACCAGCGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAgg                                                                                                                  <  2:402530/150‑1 (MQ=255)
                                  gCTCGGCAGCGCTACCAGCGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCa                                                                                                                    >  1:333608/1‑146 (MQ=255)
                                  gCTCGGCAGCGCTACCAGCGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCa                                                                                                                    <  2:333608/146‑1 (MQ=255)
                                    tCGGCAGCGCTACCAGCGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGAATCAGCATGTACATGAAC‑‑AGCACCAGgctgc                                                                                                              <  1:759718/150‑1 (MQ=255)
                                         aGCGCTACCAGCGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAg                                                                                                         <  1:1086081/150‑1 (MQ=255)
                                             cTACCAGTGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGa                                                                                                     <  1:403141/150‑1 (MQ=255)
                                                   gcggcgTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGAtcatca                                                                                               >  1:717235/1‑150 (MQ=255)
                                                             cACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGAGAAACgg                                                                                     >  2:569522/1‑150 (MQ=255)
                                                              aCCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGgc                                                                                    <  2:844151/150‑1 (MQ=255)
                                                                   ggCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCAt                                                                                                                                             <  2:228516/90‑1 (MQ=255)
                                                                   ggCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCAt                                                                                                                                             >  1:228516/1‑90 (MQ=255)
                                                                   ggCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGcagcac                                                                               >  2:269441/1‑150 (MQ=255)
                                                                     ccgccTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGcagcacca                                                                             >  1:415518/1‑150 (MQ=255)
                                                                         ggtGGGCGCGTCGGTGCGGCCAAACAGGGCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATGGCCGTGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGcagcaccagcac                                                                         <  2:267287/148‑1 (MQ=255)
                                                                         cTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACGTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGcagcaccagcac                                                                         <  1:608365/150‑1 (MQ=255)
                                                                                   tCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGatc                                                                                                   <  1:556219/114‑1 (MQ=255)
                                                                                   tCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCa                                                               >  1:986818/1‑150 (MQ=255)
                                                                                   tCGTTGCGGCCAAACAGGTCGTTCAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGatc                                                                                                   >  2:556219/1‑114 (MQ=255)
                                                                                    cgatGCGCCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCAt                                                              >  2:6096/4‑150 (MQ=255)
                                                                                        gCGGCCAAACAGGTCGTTGAAGTACTTTTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATtgtg                                                          <  1:391235/150‑1 (MQ=255)
                                                                                                    gTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTccagcca                                              >  2:166146/1‑150 (MQ=255)
                                                                                                     tCGTTGAAGTACTTTTCGGTTTCAGTGCCGTAGCTGGCCATGATGCCCGACGGCATCACCATGT‑‑TTGAACAAAGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTccagccag                                             <  1:911395/150‑1 (MQ=255)
                                                                                                     tCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGa                                                                                                     >  2:254451/1‑94 (MQ=255)
                                                                                                     tCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGa                                                                                                     <  1:254451/94‑1 (MQ=255)
                                                                                                           aaGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATtgt                                                           <  2:70833/130‑1 (MQ=255)
                                                                                                           aaGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATtgt                                                           >  1:70833/1‑130 (MQ=255)
                                                                                                              tACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCCGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGATGc                                    >  2:115026/1‑150 (MQ=255)
                                                                                                                   gatcttgtCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGcaccgc                               <  1:879880/145‑3 (MQ=255)
                                                                                                                   gTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCACtt                               <  2:792266/150‑1 (MQ=255)
                                                                                                                    tCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTg                              <  2:415518/150‑1 (MQ=255)
                                                                                                                        tgtCATTGCCGTAGCTGGCCATGCTGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTGCCAg                          >  2:555403/1‑150 (MQ=255)
                                                                                                                        tgtCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTGCCAg                          >  1:1051470/1‑150 (MQ=255)
                                                                                                                         gtCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTgagatc                         >  2:879880/1‑145 (MQ=255)
                                                                                                                           cATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTGCCAGGGc                       <  2:986818/150‑1 (MQ=255)
                                                                                                                           cATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTGCCAGGGc                       <  2:1051470/150‑1 (MQ=255)
                                                                                                                             ttGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTg                              >  2:1031533/1‑141 (MQ=255)
                                                                                                                             ttGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTg                              <  1:1031533/141‑1 (MQ=255)
                                                                                                                                 cGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTGCCAGGGCGGAAgg                 >  1:175003/1‑150 (MQ=255)
                                                                                                                                  gTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTGCCAGGGCGGAAGGt                <  1:166146/150‑1 (MQ=255)
                                                                                                                                        ggCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAg                                                                                                         <  1:856258/55‑1 (MQ=255)
                                                                                                                                        ggCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAg                                                                                                         >  2:856258/1‑55 (MQ=255)
                                                                                                                                         atggtgatgCCGGCGGGCATCATCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTGCCAGGGc                       >  1:862957/5‑136 (MQ=255)
                                                                                                                                         atggtgatgCCGGCGGGCATCATCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTGCCAGGGc                       <  2:862957/132‑1 (MQ=255)
                                                                                                                                          tggtgatgCCGGCGGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTGCCAGGGCGGAAGGTgaag            <  2:656365/143‑1 (MQ=255)
                                                                                                                                          tggtgatgCCGGCGGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTGCCAGGGCGGAAGGTgaag            >  1:656365/4‑146 (MQ=255)
                                                                                                                                           cATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTGCCAggg                        <  2:1054880/133‑1 (MQ=255)
                                                                                                                                           cATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTGCCAggg                        >  1:1054880/1‑133 (MQ=255)
                                                                                                                                           cATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTGCCAGGGCGGAAGGTGAAGAACTc       >  1:779210/1‑150 (MQ=255)
                                                                                                                                            gtgatgCCGGCGGGCATCACCATGTACATGAAC‑‑AGCACCa                                                                                                                    <  1:34170/39‑1 (MQ=21)
                                                                                                                                            gtgatgCCGGCGGGCATCACCATGTACATGAAC‑‑AGCACCa                                                                                                                    >  2:34170/2‑40 (MQ=21)
                                                                                                                                            gtgatgCCGGCGGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCTCGTCCAGCCAGGAACGCTGCCCCTTGCCAGGGCGGAAGGTGAAGAACTcc      >  2:519402/2‑150 (MQ=255)
                                                                                                                                                tgCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTGCCAGGGCGGAAGGTGAAGAACTCCTTGa  >  2:485262/1‑150 (MQ=255)
                                                                                                                                                   ccgccgGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCtt                               >  1:713480/1‑118 (MQ=255)
                                                                                                                                                   ccgccgGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCtt                               <  2:713480/118‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
CCCCCGGCTGCAGCTCCTGCACCTTGGCGTACAGGCTCGGCAGCGCTACCAGCGGCGTGGCCACCTGGGCCGCCTTGGGCGCATCGTTGCGGCCAAACAGGTCGTTGAAGTACTTGTCGGTGTCATTGCCGTAGCTGGCCATGATGCCCGCCGGCATCACCATGTACATGAAC‑‑AGCACCAGGCTGCTGTAGCTGATCATCAGGTGAAACGGCAGCACCAGCACGCCGATGGCATTGTGCCCGTCCAGCCAGGAACGCTGCCCCTTGCCAGGGCGGAAGGTGAAGAACTCCTTGA  >  NC_002947/5231954‑5232247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: