Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,560,671 | T→C | 9.9% | intergenic (‑124/+178) | hisZ ← / ← hflC | ATP phosphoribosyltransferase regulatory subunit/integral membrane ATP‑dependent zinc metallopeptidase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,560,671 | 0 | T | C | 9.9% | 110.5 / 3.0 | 44 | intergenic (‑124/+178) | hisZ/hflC | ATP phosphoribosyltransferase regulatory subunit/integral membrane ATP‑dependent zinc metallopeptidase |
Reads supporting (aligned to +/- strand): ref base T (19/20); new base C (2/2); total (22/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.42e-01 |
CGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTTTCATTCAGGATGCACCCCGCCTGGTGCATTAGCTGCCAGGCGG > NC_002947/5560531‑5560816 | cGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGa < 2:1049823/150‑1 (MQ=255) tCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCt < 1:307325/150‑1 (MQ=255) cccGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGAc < 2:407917/149‑1 (MQ=255) gTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGc > 2:507333/1‑134 (MQ=255) gTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGc < 1:507333/134‑1 (MQ=255) ttACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCa > 1:622212/1‑150 (MQ=255) ctGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCaa < 2:1075684/150‑1 (MQ=255) gggCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCt > 2:769554/1‑150 (MQ=255) cTTGCCAGCAGGCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGa > 1:321638/1‑150 (MQ=255) ttGCCAGCAGGCAAACCGTCAGAAAAGCCGATATCGCGCACAGCAGCGGGCAGCACTGATACCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGAc > 1:281410/1‑150 (MQ=255) ggCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGCGCAGCCACCGTACCCGCCACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAg < 1:625195/150‑1 (MQ=255) gCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCAAAGATCCAAGCGCAGACACACAACCCGGCACCAGAAAAGAAGCGTGCGGTGTGAGCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGc > 2:678965/1‑150 (MQ=255) aaaCCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCg > 2:845640/1‑150 (MQ=255) aaaCCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCg > 2:303780/1‑150 (MQ=255) gCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCTAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGc > 1:463508/1‑150 (MQ=255) tCGCGCACAGCAGCGGGCAGCACTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGGGCGGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACACAAAAAAGCCGGGAAATTTCCCGGCTGCCtca > 1:356284/1‑150 (MQ=255) cGGGCAGCACTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCtt < 1:845640/150‑1 (MQ=255) gcagcaCTGATCCCAGAGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTAttc > 2:651747/1‑150 (MQ=255) cagcaCTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTttca < 2:836191/150‑1 (MQ=255) cagcaCTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTttca > 2:344136/1‑150 (MQ=255) gcaCTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTttcatt < 1:940571/150‑1 (MQ=255) caCTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTttcattc < 2:946323/150‑1 (MQ=255) caCTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTttcattc > 1:571182/1‑150 (MQ=255) ccAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTTTCATTCAGGATGCa < 1:651747/150‑1 (MQ=255) cAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTTTCATTCAGGATGCAc > 2:343272/1‑150 (MQ=255) cAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTTTCATTCAGGATGCAc > 1:883200/1‑150 (MQ=255) cAGCGCAGCCACCGTACCCGACACCCTCAAATCGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCtt > 2:929882/1‑82 (MQ=255) cAGCGCAGCCACCGTACCCGACACCCTCAAATCGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCtt < 1:929882/82‑1 (MQ=255) cAGCGCAGCCACCGTACCCGACACCCTCAAATCGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCtt < 1:929874/82‑1 (MQ=255) cAGCGCAGCCACCGTACCCGACACCCTCAAATCGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCtt > 2:929874/1‑82 (MQ=255) cgcAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTTTCATTCAGGATGCAcccc > 2:881911/1‑150 (MQ=255) gCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTTTCATTCAGGATGCACCCCGCCt < 1:344136/150‑1 (MQ=255) ccACCGTACCCGACACCCTCAACTTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTTTCATTCAGGATGCACCCCGCCTg < 1:654490/150‑1 (MQ=255) ccACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGc > 2:459434/1‑109 (MQ=255) ccACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGc < 1:459434/109‑1 (MQ=255) ccACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGC‑ACAAAGCCTGCAAATGTCCCGGCTGCCTCATCATACACCCCTTTTCATTCAGGATGCACCCCGCCTgg < 2:427547/150‑1 (MQ=255) aCCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAATCGGCGCTGAGCCAATCAACCTTGCAGACGCTAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTTTCATTCAGGATGCACCCCGCCTGGt < 2:571182/150‑1 (MQ=255) aCCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTTTCATTCAGGATGCACCCCGCCTggg < 2:321638/150‑2 (MQ=255) cGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTTTCATTCAGGATGCACCCCGCCTGGTGc > 2:192558/1‑150 (MQ=255) ccGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATaca > 1:419684/1‑111 (MQ=255) ccGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATaca < 2:419684/111‑1 (MQ=255) ccTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTTTCATTCAGGATGCACCCCGCCTGGTGCATTAGCTGCCAg > 2:944064/1‑150 (MQ=255) aaaTTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCTAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTTTCATTCAGGATGCACCCCGCCTGGTGCATTAGCTGCCAGGCgg < 2:463508/150‑1 (MQ=255) aaaTTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTTTCATTCAGGATGCACCCCGCCTGGTGCATTAGCTGCCAGGCgg < 2:281410/150‑1 (MQ=255) | CGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGCGCAGCCACCGTACCCGACACCCTCAAATTGCCTTGCGAGCTGACCAAACCGTCAACCGGCGCTGAGCCAATCAACCTTGCAGACGCAAAAAAGCCGGGAAATTTCCCGGCTGCCTCATCATACACCCCTTTTCATTCAGGATGCACCCCGCCTGGTGCATTAGCTGCCAGGCGG > NC_002947/5560531‑5560816 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |