Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 484,691 | C→T | 9.8% | intergenic (‑250/+33) | yeaG ← / ← glpE | protein kinase/thiosulfate sulfurtransferase GlpE |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 484,691 | 0 | C | T | 9.8% | 104.7 / 3.4 | 41 | intergenic (‑250/+33) | yeaG/glpE | protein kinase/thiosulfate sulfurtransferase GlpE |
Reads supporting (aligned to +/- strand): ref base C (17/20); new base T (2/2); total (19/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.52e-01 |
TAACGCTACCGATGACCCGCACGCCGGTGTACCGGCTCTCCCCTTTTTGGATGGCCTGAGCTTAAGCGTAGTTGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGAAGCCTCCGTCCACGCTGTACACGTCGGAGAAACCCTGGCCTACCAGGTAGGCGGCAGCACT > NC_002947/484544‑484840 | tAACGCTACCGATGACCCGCACGCCGGTGTACCGGCTCTCCCCTTTTTGGATGGCCTGAGCTTAAGCGTAGTTGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCcgcgc > 2:1118574/1‑150 (MQ=255) taCCCGCACGCCGGTGTACCGGCTCTCCCCTTTTTGGATGGCCTGAGCTTAAGCGTAGTTGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGTGCGCCGCGCGGGCtt < 1:661688/149‑2 (MQ=255) aCCCGCACGCCGGTGTACCGGCTCTCCCCTTTTTGGATGGCCTGAGCTTAAGCGTAGTTGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGc < 1:7607/150‑1 (MQ=255) ccGGTGTACCGGCTCTCCCCTTTTTGGATGGCCTGAGCTTAAGCGTAGTTGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGaaaa < 1:249855/150‑1 (MQ=255) ccGGTGTACCGGCTCTCCCCTTTTTGGATGGCCTGAGCTTAAGCGTAGTTGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGaaaa < 2:792064/150‑1 (MQ=255) tctcCCCTTTTTGGATGGCCTGAGCTTAAGCGTAGTTGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCCAGCCCGCGCGTCGCACGGGCTGCAGGGGAAAATAAAAAATTATTc < 1:213941/150‑1 (MQ=255) cccTTTTTGGATGGCCTGAGCTTAAGCGTAGTTGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCg > 1:487803/1‑150 (MQ=255) cTGAGCTTAAGCGTAGTTGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTAAGATAAGCCGCAAGCCCGCGCGGCTCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGtc > 2:678574/1‑150 (MQ=255) ttAAGCGTAGTTGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGcc > 1:916626/1‑150 (MQ=255) ttAAGCGTAGTTGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGcc > 1:553092/1‑150 (MQ=255) gCGTAGTTGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTgg > 2:398073/1‑134 (MQ=255) gCGTAGTTGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTgg < 1:398073/134‑1 (MQ=255) gCGTAGTTGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGt < 2:916626/150‑1 (MQ=255) tAGTTGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAgg < 1:1118574/150‑1 (MQ=255) ttGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCt > 1:731456/1‑126 (MQ=255) ttGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCt < 2:731456/126‑1 (MQ=255) gTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTcgcgc < 1:295219/150‑1 (MQ=255) tGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCcaca > 2:176385/1‑150 (MQ=255) tGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCcaca < 2:139770/150‑1 (MQ=255) tGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCACGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGGAGGTCGCGCGCcaca > 2:70558/1‑150 (MQ=255) ggTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCg < 1:613980/117‑1 (MQ=255) ggTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCg > 2:613980/1‑117 (MQ=255) tAANGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGaa > 2:699886/1‑150 (MQ=255) tAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGaa < 1:766706/150‑1 (MQ=255) tAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGaa < 2:213450/150‑1 (MQ=255) aaaGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCa > 2:949562/1‑99 (MQ=255) aaaGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCa < 1:949562/99‑1 (MQ=255) aaaGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGAAg < 1:414202/150‑1 (MQ=255) aaaGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGAAGCCTCCGTCCAc < 2:487803/150‑1 (MQ=255) aGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCACTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGAAGCCTCCGTCCACGc > 2:1052235/1‑150 (MQ=255) ttACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGAAGTTTCCGTTCACGCCGTACACGt > 2:526417/1‑150 (MQ=255) tACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGAAGCCTCCGTCCACGCTGTACACGTc < 2:967846/150‑1 (MQ=255) ccGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGAAGCCTCCGTCCACGCTGTACACGTCGGAGAAAcc > 2:376987/1‑150 (MQ=255) ccGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGAAGCCTCCGTCCACGCTGTACACGTCGGAGAAAcc > 1:82202/1‑150 (MQ=255) gTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAgg < 2:1124655/96‑1 (MQ=255) gTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAgg > 1:1124655/1‑96 (MQ=255) gCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGAAGCCTCCGTCCACGCTGTACACGTCGGAGAAACCCTGGCCTACCAGGTAggc > 1:848802/1‑150 (MQ=255) gCCCGTGCGCCGCGCGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGAAGCCTCCGTCCACGCTGTACACGTCGGAGAAACCCTGGCCTACCAGGTa < 1:91231/143‑1 (MQ=255) gCCCGTGCGCCGCGCGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGAAGCCTCCGTCCACGCTGTACACGTCGGAGAAACCCTGGCCTACCAGGTa > 2:91231/1‑143 (MQ=255) gCCCGTGCGCCGCGCGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGAAGCCTCCGTCCACGCTGTACACGTCGGAGAAACCCTGGCCTACCAGGTAGGCGgca > 2:479846/1‑150 (MQ=255) gCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGAAGCCTCCGTCCACGCTGTACACGTCGGAGAAACCCTGGCCTACCAGGTAGGCGgca < 2:82202/150‑1 (MQ=255) gCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGAAGCCTCCGTCCACGCTGTACACGTCGGAGAAACCCTGGCCTACCAGGTAGGCGgca < 1:37485/150‑1 (MQ=255) cgcgGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGAAGCCTCCGTCCACGCTGTACACGTCGGAGAAACCCTGGCCTACCAGGTAGGCGGCAGCACt > 2:887536/1‑150 (MQ=255) cgcgGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGAAGCCTCCGTCCACGCTGTACACGTCGGAGAAACCCTGGCCTACCAGGTAGGCGGCAGCACt < 1:699886/150‑1 (MQ=255) | TAACGCTACCGATGACCCGCACGCCGGTGTACCGGCTCTCCCCTTTTTGGATGGCCTGAGCTTAAGCGTAGTTGGTTATCTGCAAGGTAAAGGGGTGAGAAAGGCAGAAGTTACGAACGACCGTTCGTCAGATAAGCCGCAAGCCCGCGCGGCGCACGGGCTGCAGGGGAAAATAAAAAATTATTCAGCGTTGCCCTGGGCGGTCTCGGCCGGGTAGGTCGCGCGCCACAGTTCGAAGCCTCCGTCCACGCTGTACACGTCGGAGAAACCCTGGCCTACCAGGTAGGCGGCAGCACT > NC_002947/484544‑484840 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |