Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,610,332 | G→A | 9.2% | A78A (GCC→GCT) | PP_4929 ← | LysR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,610,332 | 0 | G | A | 9.2% | 114.5 / 2.9 | 44 | A78A (GCC→GCT) | PP_4929 | LysR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (23/16); new base A (2/2); total (26/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.92e-01 |
TAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCATGGCTTCGTCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCGACTGGGCTTTGTGCTGCTCACGTGCCA > NC_002947/5610186‑5610477 | tAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCATGGCTTCGTCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCg > 1:779047/1‑150 (MQ=255) gCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCATGGCTTCGTCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGtcctc > 1:853052/1‑150 (MQ=255) gCCAGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCATGGCTTCGTCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGc > 1:280222/1‑150 (MQ=255) gCCAGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCATGGCTTCGTCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATACCGCGGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGc > 1:851325/1‑150 (MQ=255) cAGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCATGGCTTCGTCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCaa < 1:1121204/150‑1 (MQ=255) aGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCATGGCTTCGTCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAg < 2:926751/150‑1 (MQ=255) gTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCATGGCTTCGTCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAgg > 1:1100053/1‑150 (MQ=255) gtcgAGGCTGTCGATCACCGGCTGATACGGCATGGCTTCGTCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCt < 2:280222/150‑1 (MQ=255) tGTCGATCACCGGCTGATACGGCATGGCTTCGTCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGAGCGTCCTCCAGCAAGGCGCTGCCGtttt > 1:106940/1‑150 (MQ=255) tGTCGATCACCGGCTGATACGGCATGGCTTCGTCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGAGCGTCCTCCAGCAAGGCGCTGCCGtttt > 1:106949/1‑150 (MQ=255) gATCACCGGCTGATACGGCATGGCTTCGTCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGt > 2:859141/1‑150 (MQ=255) aTCACCGGCTGATACGGCATGGCTTCGTCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGAGTTGCCATCCAGGCGTTCGCACTGGCATCACACTTGAAGTTCGTCTTGCAGCTAGGCGCTGCCGTTTTCAGTc > 1:804717/1‑150 (MQ=255) ccGGCTGATACGGCATGGCTTCGTCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAAtt > 2:177668/1‑150 (MQ=255) gCTGATACGGCATGGCTTCGTCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCg < 2:622969/150‑1 (MQ=255) ggCATGGCTTCGTCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTCCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTgccgg < 1:390346/150‑1 (MQ=255) tCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTgcgc < 2:1100053/150‑1 (MQ=255) tCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCAAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCa < 1:1039/120‑1 (MQ=255) tCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCAAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCa > 2:1039/1‑120 (MQ=255) cgcgACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGaa > 1:89572/1‑150 (MQ=255) ccGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGt > 2:1101882/1‑150 (MQ=255) gcagcaAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACaga > 2:612876/1‑146 (MQ=255) gcagcaAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACaga < 1:612876/146‑1 (MQ=255) agcaAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGAcc > 1:587257/1‑150 (MQ=255) gcaAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGAccc < 2:587257/150‑1 (MQ=255) aaGNCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCAGTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTACGGATGCCGGCCGCTGCTGCGCTCGAACAGAGTGAccccc < 1:819951/150‑1 (MQ=255) aGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCa > 1:479001/1‑150 (MQ=255) gCCTCCTGCCCGCGCATCAGGGCCAGGGCTCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAgg > 1:426691/1‑150 (MQ=255) gCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAgg > 2:745818/1‑150 (MQ=255) tcctGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCg > 1:337786/1‑150 (MQ=255) tGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGtt > 2:218773/1‑150 (MQ=255) ggCCCGCGCATCAGGGGCAGGGCGCGGCCAAACAGACCTTCTCACTTGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGtt < 2:851325/149‑1 (MQ=255) gCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGAGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGttt < 2:106940/150‑1 (MQ=255) gCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGAGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGttt < 2:106949/150‑1 (MQ=255) cccGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCGGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTc < 2:53311/150‑1 (MQ=255) gcATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGagca < 1:129574/150‑1 (MQ=255) cATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGagcag > 1:567041/1‑150 (MQ=255) cATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGagcag < 2:779047/150‑1 (MQ=255) aTCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTCCGagcagc > 1:385973/1‑150 (MQ=255) tCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAgcg > 2:1044399/1‑150 (MQ=255) ccagggcTCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTGTCGAGCAGCGCGGTga < 2:568964/150‑2 (MQ=255) agggcGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCa < 1:177668/150‑1 (MQ=255) gCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTACGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCGACTGGGCTTTGtgctg > 2:587189/1‑150 (MQ=255) aaTTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGTGCGATGGCACTGCTGATCGCCGACTGGGCTTTGTGCTGCTCACGt > 1:962754/1‑150 (MQ=255) cgcgGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCGACTGGGCTTTGTGCTGCTCACGTGCCa > 2:273313/1‑150 (MQ=255) | TAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCATGGCTTCGTCCTGCGCGACCCGCAGCAAGGCCTCCTGCCCGCGCATCAGGGCCAGGGCGCGGCCATCCAGGCGTTCGCACTGGCGTAACAATTCGCGGGCGTCCTCCAGCAAGGCGCTGCCGTTTTCAGTCAATTTCGGTTGCCGGCCGCTGCTGCGCTCGAACAGAGTGACCCCCAGGTCGGTTTCGAGCAGCGCGATGGCACTGCTGATCGCCGACTGGGCTTTGTGCTGCTCACGTGCCA > NC_002947/5610186‑5610477 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |