Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 539,618 | G→A | 8.5% | V665I (GTT→ATT) | rpoB → | DNA‑directed RNA polymerase subunit beta |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 539,618 | 0 | G | A | 8.5% | 132.2 / 3.2 | 47 | V665I (GTT→ATT) | rpoB | DNA‑directed RNA polymerase subunit beta |
Reads supporting (aligned to +/- strand): ref base G (19/24); new base A (2/2); total (21/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01 |
TCACGTCATCGCACAGGCTTCGGCCGCGATGAACGACAAGAAGCAACTGATCGATGAGCTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGCGTGCCGACAAGCCGCTGGTAGGTACCGGCATGGAGCGCAACGTTGCC > NC_002947/539479‑539767 | tCACGTCATCGCACAGGCTTCGGCCGCGATGAACGACAAGAAGCAACTGATCGATGAGCTGGTAGCAGTTCGTCACCTAAAAAAATGCTCCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGt < 2:538296/150‑1 (MQ=255) cACGTCATCGCACAGGCTTCGGCCGCGATGAACGACAAGAAGCAACTGATCGATGAGCTGGTAGCAGTTCGTCACCTGAACGAATTCATCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGtt < 1:905303/150‑1 (MQ=255) cGTCATCGCACAGGCTTCGGCCGCGATGAACGACAAGAAGCAACTGATCGATGAGCTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGc > 2:944769/1‑150 (MQ=255) tCATCGCACAGGCTTCGGCCGCGATGAACGACAAGAAGCAACTGATCGATGAGCTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGCCGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAg < 1:766977/150‑1 (MQ=255) gCTTCGGCCGCGATGAACGACAAGAAGCAACTGATCGATGAGCTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGAtt < 1:830732/150‑1 (MQ=255) cTTCGGCCGCGATGAACGACAAGAAGCAACTGATCGATGAGCTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACCTTGCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTc < 1:258065/150‑1 (MQ=255) ggCCGCGATGAACGACAAGAAGCAACTGATCGATGAGCTGGTAGCAGTTCGTAACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGtt < 2:518806/150‑1 (MQ=255) gATGAACGACAAGAAGCAACTGATCGATGAGCTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGa < 1:832437/150‑1 (MQ=255) aTGAACGACAAGAAGCAACTGATCGATGAGCTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAg < 1:954018/150‑1 (MQ=255) cGACAAGAAGCAACTGATCGATGAGCTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCacga < 1:102337/150‑1 (MQ=255) cAAGAAGCAACTGATCGATGAGCTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCacgacga < 2:916912/150‑1 (MQ=255) gaagCAACTGATCGATGAGCTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGc > 2:59730/1‑150 (MQ=255) tGATCGATGAGCTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCac > 1:450302/1‑134 (MQ=255) tGATCGATGAGCTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCac < 2:450302/134‑1 (MQ=255) gATCGATGAGCTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGc < 1:944769/150‑1 (MQ=255) gATGAGCTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTg > 1:500915/1‑150 (MQ=255) tGAGCTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGAt > 1:991027/1‑150 (MQ=255) cTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGtt < 1:342184/113‑1 (MQ=255) cTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGtt > 2:342184/1‑113 (MQ=255) tGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGtt < 2:1109413/150‑1 (MQ=255) ggTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACTATGATAAAGAATAGTTTGTATGATGTTGTTTCCGTTGTAGCGTCGCTGATTCCGTTCCTCTTGCACGACGACGCCAACCGTGCGTTGATGGGTTc < 1:252624/150‑1 (MQ=255) agggcGTCAGCTGAACGAATTCACCGTCAAGGTGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACAt < 1:1077842/146‑1 (MQ=255) gTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGATTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGc > 1:546756/1‑150 (MQ=255) gTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGATTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGc > 1:549514/1‑150 (MQ=255) ccTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGaa > 2:866042/1‑138 (MQ=255) ccTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGaa < 1:866042/138‑1 (MQ=255) gAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGAt < 2:323812/126‑1 (MQ=255) gAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGAt > 1:323812/1‑126 (MQ=255) aaCGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCt > 1:643942/1‑150 (MQ=255) tCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGc > 2:298498/1‑150 (MQ=255) agaaGGTGCGGGAAGACGTCACCCTGATGGACGTTTCGGCGAAGCAGGTTGTTTGGGTTGCAGCGTCGCTGATTCCGTTCCTAGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGc > 2:381106/3‑150 (MQ=255) gcCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGATTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGCGTGCCGa < 2:546756/150‑1 (MQ=255) gcCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGATTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGCGTGCCGa < 2:549514/150‑1 (MQ=255) ggAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGCGTGCCGACaa < 1:803271/150‑1 (MQ=255) aGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGCGTGCCGACAAGcc < 1:59730/150‑1 (MQ=255) gTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCGTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGCGTGCCGACAAGCCGCTg < 2:500915/150‑1 (MQ=255) gTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGCGTGCCGACAAGCCGCTg > 1:813769/1‑150 (MQ=255) aCCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGCGTGCCGACAAGCCGCTggta > 1:882419/1‑150 (MQ=255) cccTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGCGTGCCGACAAGCCGCTggtag > 1:60129/1‑150 (MQ=255) ccTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGc < 1:54501/47‑1 (MQ=255) ccTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGc > 2:54501/1‑47 (MQ=255) ccTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCCAGTGCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGACCATGCAGCGTCAGGCTATACCGACCCTGCGTGCCGACAAGCCGCTggtagg > 1:202846/1‑150 (MQ=255) aTGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGCGTGCCGACAAGCCGCTGGTAGGTAcc > 1:298654/1‑150 (MQ=255) tGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGCGTGCCGACAAGCCGCTGGTAGGTACCg < 1:360839/150‑1 (MQ=255) gACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGCGTGCCGACAAGCCGCTGGTAGGTACCGGc > 1:732125/1‑150 (MQ=255) gCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGCGTGCCGACAAGCCGCTGGTAGGTACCGGCATGGAgcg > 1:539766/1‑150 (MQ=255) gCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGCGTGCCGACAAGCCGCTGGTAGGTACCGGCATGGAGCGCAACGt < 2:813769/150‑1 (MQ=255) gttgttTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGaa < 2:305122/74‑1 (MQ=255) gttgttTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGaa > 1:305122/1‑74 (MQ=255) gttgttTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGCGTGCCGACAAGCCGCTGGTAGGTACCGGCATGGAGCGCAACGTTGcc > 1:17686/1‑150 (MQ=255) | TCACGTCATCGCACAGGCTTCGGCCGCGATGAACGACAAGAAGCAACTGATCGATGAGCTGGTAGCAGTTCGTCACCTGAACGAATTCACCGTCAAGGCGCCGGAAGACGTCACCCTGATGGACGTTTCGCCGAAGCAGGTTGTTTCCGTTGCAGCGTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCGTTGATGGGTTCGAACATGCAGCGTCAGGCTGTACCGACCCTGCGTGCCGACAAGCCGCTGGTAGGTACCGGCATGGAGCGCAACGTTGCC > NC_002947/539479‑539767 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |