Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,000,005 | G→A | 9.0% | V162M (GTG→ATG) | PP_5256 → | cyclic nucleotide‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,000,005 | 0 | G | A | 9.0% | 114.3 / 2.9 | 45 | V162M (GTG→ATG) | PP_5256 | cyclic nucleotide‑binding protein |
Reads supporting (aligned to +/- strand): ref base G (21/19); new base A (2/2); total (23/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.48e-01 |
TTGATCTTCCTCGCCGCCGTGGTCGCGGCCGCAGGCTACGTGCTGCAACTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGATATCGACTGGCGCGCCACGCGCCTGCTGACCGGAACCGGCAGCCTGGCGGTGATCCCCAACTCGGTAGCG > NC_002947/5999861‑6000148 | ttGATCTTCCTCGCCGCCGTGGTCGCGGCCGCAGGCTACGTGCTGCAACTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTg < 1:322235/150‑1 (MQ=255) gTCGCGGCCGCAGGCTACGTGCTGCAACTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGATGACGTCTTCAGCGGCATCGTGc > 2:832481/1‑127 (MQ=255) gTCGCGGCCGCAGGCTACGTGCTGCAACTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGATGACGTCTTCAGCGGCATCGTGc < 1:832481/127‑1 (MQ=255) tCGCGGCCGCAGGCTACGTGCTGCAACTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCGGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGa > 1:242827/1‑150 (MQ=255) gcgGCCGCAGGCTACGTGCTGCAACTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGAtt > 2:74296/1‑150 (MQ=255) gcgGCCGCAGGCTACGTGCTGCAACTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGAtt < 1:973466/150‑1 (MQ=255) gCCGCAGGCTACGTGCTGCAACTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGc < 1:440459/150‑1 (MQ=255) cGCAGGCTACGTGCTGCAACTGCCCGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGa < 2:181532/150‑1 (MQ=255) gCAGGCTACGTGCTGCAACTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGAc > 2:689893/1‑150 (MQ=255) gCAGGCTACGTGCTGCAACTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGAc > 1:891804/1‑150 (MQ=255) ccactggctccAACTGCCGGTAAAGGTCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAAt < 1:44205/144‑1 (MQ=255) aCGGGCTGCAACGGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGGAATGGCCATCGTCATCGGCCGGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAAgct < 2:54970/150‑1 (MQ=255) tgcAACTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCg > 1:1085947/1‑150 (MQ=255) cTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATc < 2:983571/121‑1 (MQ=255) cTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATc > 1:983571/1‑121 (MQ=255) cTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCATGCTGAACACCACGCGGCCCTATCAGATTGGCGAc < 2:229299/132‑1 (MQ=255) cTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCATGCTGAACACCACGCGGCCCTATCAGATTGGCGAc < 2:229031/132‑1 (MQ=255) cTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCATGCTGAACACCACGCGGCCCTATCAGATTGGCGAc > 1:229031/1‑132 (MQ=255) cTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCATGCTGAACACCACGCGGCCCTATCAGATTGGCGAc > 1:229299/1‑132 (MQ=255) tGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCa > 1:305821/1‑150 (MQ=255) ggTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGc > 2:248022/1‑95 (MQ=255) ggTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTAGCAGATTGGCGACTCAATCTCCATCGACGGCACCGa > 2:784454/1‑150 (MQ=255) ggTAAAGGGCCTGCTGGACACCGCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGc < 1:248022/95‑1 (MQ=255) tAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGCCTCAATCTCCATCGACGGCACCGAAg < 2:530211/150‑1 (MQ=255) aGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCa > 2:894871/1‑150 (MQ=255) cACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCCTCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCt < 2:913474/144‑1 (MQ=255) cACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCt > 1:913474/1‑144 (MQ=255) cACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGatac > 2:85886/1‑149 (MQ=255) tCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGATATCGAc > 2:372837/1‑150 (MQ=255) tGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGATATCGACTGGCGCGCCa < 1:496561/150‑1 (MQ=255) gCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGATATCGACTGGCGCGCCAcg > 2:129624/1‑150 (MQ=255) ccATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGATATCGACTGGCGCGCCAcgc > 2:97566/1‑150 (MQ=255) cATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGATATCGACTGgcgcgtggcgcg > 1:56185/1‑143 (MQ=255) aTCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAaca < 2:1103470/64‑1 (MQ=255) aTCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAaca > 1:1103470/1‑64 (MQ=255) cGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGATATCGACTGGCGCGCCACGCGCct < 1:894871/150‑1 (MQ=255) ggCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGATATCGACTGGCGCGCCACGCGCCTGCTGACCGGAAc < 2:824610/150‑1 (MQ=255) tGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGATATCGACTGGCGCGCCACGCGCCTGCTGACCGGAACCGGCa < 1:129624/150‑1 (MQ=255) cacTGGCTGACGTCTTCAGCGGCATCTTTCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGATATCGACTGGCGCGCCACGCGCCTGCTGACCGGAACCGGCAGCCTGGCgg < 1:786365/150‑1 (MQ=255) gCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGATATCGACTGGCGCGCCACGCGCCTGCTGACCGGAACCGGCAGCCTGGCGGTGATc < 2:305821/150‑1 (MQ=255) cTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGATATCGACTGGCGCGCCACGCGCCTGCTGACCGGAACCGGCAGCCTGGCGGTGATcc > 1:1060824/1‑150 (MQ=255) ttCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGATATCGACTGGCGCGCCACGCGCCTGCTGACCGGAACCGGCAGc > 1:1061114/1‑129 (MQ=255) ttCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGATATCGACTGGCGCGCCACGCGCCTGCTGACCGGAACCGGCAGc < 2:1061114/129‑1 (MQ=255) tCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGATATCGACTGGCGCGCCACGCGCCTGCTGACCGGAACCGGCAGCCTGGCGGTGATCCCCAACTCgg > 1:421191/1‑150 (MQ=255) ggCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGATATCGACTGGCGCGCCACGCGCCTGCTGACCGGAACCGGCAGCCTGGCGGTGATCCCCAACTCGGTAGCg < 1:825572/150‑1 (MQ=255) | TTGATCTTCCTCGCCGCCGTGGTCGCGGCCGCAGGCTACGTGCTGCAACTGCCGGTAAAGGGCCTGCTGGCCACCTCCGGGGTAATGGCCATCGTCATCGGCCTGGCGCTGCAGAGCACACTGGCTGACGTCTTCAGCGGCATCGTGCTGAACACCACGCGGCCCTATCAGATTGGCGACTCAATCTCCATCGACGGCACCGAAGGCAAGGTCCTGGATATCGACTGGCGCGCCACGCGCCTGCTGACCGGAACCGGCAGCCTGGCGGTGATCCCCAACTCGGTAGCG > NC_002947/5999861‑6000148 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |