Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,041,199 | T→A | 7.3% | N12I (AAT→ATT) | PP_5293 ← | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,041,199 | 0 | T | A | 7.3% | 162.4 / 4.6 | 55 | N12I (AAT→ATT) | PP_5293 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (27/24); new base A (2/2); total (29/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.18e-01 |
TCTTTGCCCTGGGCGTCGATAAAAGGGTCTTGCTCGCGCTTGAGGTGCCATAGCACCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCCTGCTGCAGCTCGAAAATCTCGTTCATGCCCTTCTGCGCCAAAGCGAGCATGGCGTTGAAATCTTC > NC_002947/6041055‑6041340 | tctTTGCCCTGGGCGTCGATAAAAGGGTCTTGCTCGCGCTTGAGGTGCCATAGCACCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGc > 2:36009/1‑150 (MQ=255) tttGCCCTGGGCGTCGATAAAAGGGTCTTGCTCGCGCTTGAGGTGCCATAGCACCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCgg < 2:889419/150‑1 (MQ=255) cgCCCCGGGCGTCCATAAAAGGGTCCTGCGCGCGCTTGAGGTGCCATAGCACCGGGGCGCCCAGCATGTGTCGAAGCGGCACCACCAGGCCCAACAGCGCAGAGAGGTGGAAGAACATCGTCCATGGCCGGATTCCAGCATTGGGCgggg < 2:137086/149‑1 (MQ=255) gCCCTGGGCGTCGATAAATGGGTCTTGCTCGCGCTTGAGGTGCCATAGCACCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGt < 1:1052522/150‑1 (MQ=255) gCCCTGGGCGTCGATAAAAGGGTCTTGCTCGCGCTTGAGGTGCCATAGCACCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGt > 2:1073023/1‑150 (MQ=255) ggCGTCGATAAAAGGGTCTTGCTCGCGCTTGAGGTGCCATAGCACCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGa < 1:1039828/150‑1 (MQ=255) aTAAAAGGGTCTTGCTCGCGCTTGAGGTGCCATAGCACCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTc < 1:1046905/150‑1 (MQ=255) aaGGGTCTTGCTCGCGCTTGAGGTGCCATAGCACCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAAt > 1:913494/1‑150 (MQ=255) cTTGCTCGCGCTTGAGGTGCCATAGCACCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCa < 2:1003219/150‑1 (MQ=255) tCGCGCTTGAGGTGCCATAGCACCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGccc > 1:628301/1‑150 (MQ=255) ctatggCACCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGc > 1:319984/6‑150 (MQ=255) aTAGCACCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCg > 2:472387/1‑150 (MQ=255) tAGCACCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCgg > 1:1064385/1‑150 (MQ=255) aCCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCCCCTCCTTGGGCggggtc > 2:905670/1‑146 (MQ=255) aCCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTtc > 1:1083651/1‑150 (MQ=255) aCCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCAATGCCGAAATCCGGCAATGGGCg < 1:876917/97‑1 (MQ=37) aCCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCAATGCCGAAATCCGGCAATGGGCg > 2:876917/1‑97 (MQ=37) ccAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTtca < 2:628301/150‑1 (MQ=255) ccAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTtca < 2:913494/150‑1 (MQ=255) ccAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCAGGTTGTTCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTtca < 1:868543/150‑1 (MQ=255) gCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGc > 2:599841/1‑139 (MQ=255) gCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGc < 1:599841/139‑1 (MQ=255) gCCCAGCAGGTGCCCAAGCGGCACTACCAGGCACAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGAATTTCGGCATTGGGCGGGGTGACTGACAGGTGCGAAACGCCCATTCCCCGCACCTCCTTTGCCGGTTtcagtcgacc > 2:59760/1‑146 (MQ=255) ccAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGACGGGGTGATCGACAGGTTCGAATCGCTCATCCCCCGCACCCCCTTGGCCGGTTTCAGTCAGCCAg > 1:1046367/1‑150 (MQ=255) cagcagGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGt < 2:676612/101‑1 (MQ=255) cagcagGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGt > 1:676612/1‑101 (MQ=255) gTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACa > 2:705766/1‑92 (MQ=255) gTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACa < 1:705766/92‑1 (MQ=255) gTGCACAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCTCCTCCTTGGCCGATTTCAGTCAGCCAGTGctgcc < 2:200695/150‑1 (MQ=255) tGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGctgcct > 1:953358/1‑150 (MQ=255) cccAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGctgcctgc < 1:13858/150‑1 (MQ=255) aaGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCcttctac > 1:376238/1‑148 (MQ=255) gCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCCTGCTGCAg < 2:1048317/150‑1 (MQ=255) ccAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCctgctg > 1:31237/1‑138 (MQ=255) ccAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCctgctg < 2:31237/138‑1 (MQ=255) ccAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCCTGCTGCAGCTCGAAAAt > 2:931604/1‑150 (MQ=255) ccAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCCTGCTGCAGCTCGAAAAt > 2:142418/1‑150 (MQ=255) cAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCCTGCTGCAGCTCGAAAAtc > 2:653132/1‑150 (MQ=255) cAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGtgctg < 2:214657/124‑1 (MQ=255) cAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGtgctg > 1:214657/1‑124 (MQ=255) aaCAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCCTGCTGCAGCTCGAAAATCTCGTTCa > 1:336516/1‑150 (MQ=255) cAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCCTGCTGCAGCTCGAAAATCTCGTTCATg < 1:653132/150‑1 (MQ=255) aGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCCTGCTGCAGCTCGAAAATCTCGTTCATGc < 1:37411/150‑1 (MQ=255) cgGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCa < 1:671619/110‑1 (MQ=255) cgGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCa > 2:671619/1‑110 (MQ=255) ggAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTg < 1:229618/43‑1 (MQ=255) ggAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTg > 2:229618/1‑43 (MQ=255) gAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCCTGCTGCAGCTCGAAAATCTCGGTCATGCCCTTCTGCGCCAAAGCg > 2:428511/1‑150 (MQ=255) ccccGCCCAATGCCGAAATCCGGCAATGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCCTGCTGCAGCTCGAAAATCTCGTTCATGCCCTTCTGCGCCAAAGCGAGc > 2:811979/4‑150 (MQ=255) tCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCCTGCTGCAGCTCGAAAATCTCGTTCATGCCCTTCTGCGCCAAAGCGAGCAt < 2:1064385/150‑1 (MQ=255) cccATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCCTGCTGCAGCTCGAAAATCTCGTTCATGCCCTTCTGCGCCAAAGCGAGCATGGc > 1:431538/1‑150 (MQ=255) cccATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCCTGCTGCAGCTCGAAAATCTCGTTCATGCCCTTCTGCGCCAAAGCGAGCATGGc > 1:1071007/1‑150 (MQ=255) cGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCCTGCTGCAGCTCGAAAATCTCGTTCATGCCCTTCTGCGCCAAAGCGAGCATGGCGTTGAAAt < 2:336516/150‑1 (MQ=255) ggATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCCTGCTGCAGCTCGAAAATCTCGTTCATGCCCTTCTGCGCCAAAGCGAGCATGGCGTTGAAATc < 1:1021357/150‑1 (MQ=255) atccGGCAATGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCCTGCTGCAGCTCGAAAATCTCGTTCATGCCCTTCTGCGCCAAAGCGAGCATGGCGTTGAAATCTTc < 1:811979/147‑1 (MQ=255) | TCTTTGCCCTGGGCGTCGATAAAAGGGTCTTGCTCGCGCTTGAGGTGCCATAGCACCAGCGGGCCCAGCAGGTGCCCAAGCGGCACTACCAGGCCCAACAGCGCGGAGAGGTGGCAGAACATCGCCCATTGCCGGATTTCGGCATTGGGCGGGGTGATCGACAGGTTCGAATCGCTCATGCCCCGCACCTCCTTGGCCGGTTTCAGTCAGCCAGTGCTGCCTGCTGCAGCTCGAAAATCTCGTTCATGCCCTTCTGCGCCAAAGCGAGCATGGCGTTGAAATCTTC > NC_002947/6041055‑6041340 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |