Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,070,587 | A→G | 100% | G38G (GGT→GGC) | PP_5324 ← | two‑component system response regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,070,587 | 0 | A | G | 93.3% | 150.2 / 0.1 | 56 | G38G (GGT→GGC) | PP_5324 | two‑component system response regulator |
Reads supporting (aligned to +/- strand): ref base A (3/1); new base G (28/23); total (31/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.24e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
ACCATGATGAACTGCAGGTTCTTCAGTGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGACCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGCACATTCACTTTACTCATCGATACTCCTTTTGAATCCCGACTAGCC > NC_002947/6070447‑6070728 | aCCATGATGAACTGCAGGTTCTTCAGTGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATa < 2:740469/150‑1 (MQ=255) aCTGCAGGTTCTTCAGTGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGa > 1:216914/1‑150 (MQ=255) cTGCAGGTTCTTCAGTGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGAGGCCGTTGACAGcgtggtggga > 2:613103/1‑146 (MQ=255) tgggTTC‑TCAGTGCAGGCTGCTGACGGCACCAGGAAAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCAAAGGACCAGGTCGAACGCTTCCTTGACGAGCATGGCCATGGCGTTGCGGCCGTTGATAGCGTCGTCGATGGcc > 2:464354/3‑150 (MQ=255) cAGGTTCTTCAGTGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTGCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGACCGTTGATAGCGTCGTCGATGGc > 2:109072/1‑150 (MQ=255) cAGGTTCTTCAGCGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGGGCATGGCCAGGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGc < 1:324912/150‑1 (MQ=255) cggTTCTTAAGTGGAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGcc < 2:99765/149‑1 (MQ=255) ttcAGTGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATAccc > 1:919998/1‑150 (MQ=255) aGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGc < 1:753182/150‑1 (MQ=255) gctgctGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCAt > 2:598511/1‑150 (MQ=255) tgctgACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTa < 2:773156/150‑1 (MQ=255) tgACGGCACCAGGTCAGCAGTTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCCTCGTCGATGGCCATACCCGGGAAGGCATGACGc > 2:49426/1‑150 (MQ=255) cGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGa < 2:634761/150‑1 (MQ=255) aCCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACt > 2:556325/1‑150 (MQ=255) aGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGc > 1:738988/1‑150 (MQ=255) aGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCACGGCCATGGCCTTACACACAAAAATAACGTCCTCCGGGGCCATACCCGGGAAGGCATTACGCAGACACTTGc < 1:300784/150‑1 (MQ=255) gTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCgg < 1:613103/150‑1 (MQ=255) gCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCg < 1:472845/145‑1 (MQ=255) gCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCg > 2:472845/1‑145 (MQ=255) gaaTTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAg > 1:771101/2‑150 (MQ=255) aaTTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGa < 1:899647/106‑1 (MQ=255) aaTTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGa > 2:899647/1‑106 (MQ=255) aaTTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGa > 1:255964/1‑150 (MQ=255) ccAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCAc < 2:216914/150‑1 (MQ=255) gCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGAt > 2:133734/1‑150 (MQ=255) ccAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATa > 1:1015478/1‑150 (MQ=255) gACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGcc > 2:369616/1‑99 (MQ=255) gACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGcc < 1:369616/99‑1 (MQ=255) tCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGtt > 1:944564/1‑74 (MQ=255) tCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGtt < 2:944564/74‑1 (MQ=255) cGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTc > 1:477387/1‑150 (MQ=255) cATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATc < 1:556325/150‑1 (MQ=255) tCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACgg > 2:70884/1‑137 (MQ=255) tCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACgg < 1:70884/137‑1 (MQ=255) cccAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGcgtc < 2:41089/73‑1 (MQ=255) cccAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGcgtc > 1:41089/1‑73 (MQ=255) ccAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGAc > 2:555339/1‑150 (MQ=255) ccAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGACCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCagggc > 1:331160/1‑146 (MQ=255) tCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGACCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGc > 1:49974/1‑150 (MQ=255) gCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGGTGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGcac > 2:679860/1‑150 (MQ=255) acaGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATATTCTGGGCGTCATCCACGACCAGCACAt > 1:550554/1‑150 (MQ=255) aCCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGCACATTCACt < 1:598511/150‑1 (MQ=255) gggTCGAACGCTTCCTTGCCGCGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACCTGCCGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGCACATTCACTTTa < 2:969220/149‑1 (MQ=255) gAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGCACATTCACTTTACTCAt > 1:1045748/1‑150 (MQ=255) aaCGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGACCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGCACATTCACTTTACTCATc < 1:109072/150‑1 (MQ=255) aCGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGCACATTCACTTTACTCATCg > 1:63506/1‑150 (MQ=255) gCTTCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGCACATTCACTTTACTCATCGAt > 2:119141/1‑150 (MQ=255) ttCCTTGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCATACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGCACATTCACTTTACTCATCGATAc < 1:1070459/150‑1 (MQ=255) ttGCCGAGCATGGCCATGGCCTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACCTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGCACATTCACTTTGCTCATCGATACTCCt < 2:1015478/150‑1 (MQ=255) ccGATCATGGCCATGTCCTTGCTGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGCACATTCACTTTACTCATCGATACTCCtttt < 1:464354/150‑1 (MQ=255) atggccatggccTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGCACATTCACTTTACTCATCGATACTCCTTTTGAATcc < 2:919998/150‑1 (MQ=255) tggccTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGCACATTCACTTTACTCATCGATACTCCttt < 1:1076542/136‑1 (MQ=255) tggccTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGCACATTCACTTTACTCATCGATACTCCttt > 2:1076542/1‑136 (MQ=255) tggccTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGCACATTCACTTTACTCATCGATACTCCTTTTGAATCCCGACTAg > 1:783441/1‑150 (MQ=255) ggccTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGCACATTCACTTTACTCATCGATACTCCTTTTGAATCCCGACTAGc < 2:945607/150‑1 (MQ=255) gccTTGCGGCCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGCACATTCACTTTACTCATCGATACTCCTTTTGAATCCCGACTAGcc > 2:899002/1‑150 (MQ=255) | ACCATGATGAACTGCAGGTTCTTCAGTGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCTTGCGACCGTTGATAGCGTCGTCGATGGCCATACCCGGGAAGGCATTACGCAGACACTTGCGGACCAGATCACGGATAAACGGGGCGTCATCCACGACCAGCACATTCACTTTACTCATCGATACTCCTTTTGAATCCCGACTAGCC > NC_002947/6070447‑6070728 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |