| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,072,962 | G→C | 11.8% | S450R (AGC→AGG) ‡ | PP_5327 ← | phosphate ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,072,962 | 0 | G | C | 11.8% | 89.4 / 5.8 | 34 | S450R (AGC→AGG) ‡ | PP_5327 | phosphate ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base G (16/14); new base C (2/2); total (18/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.30e-01 | |||||||||||
CATGATCTTCTGGTCCAGGTGCAGGTACGGGTAGTTTCCATCCACCGGCAGCGACGGCGCCAGCTTCACCACACCTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACGGTGCGCGGAATTCGCGCCAGGCCTTCTTCGGTGGCCACGATCACCACCGGTACCGCCAGCAATGCCAGG > NC_002947/6072815‑6073106 | cATGATCTTCTGGTCCAGGTGCAGGTACGGGTAGTTTCCATCCACCGGCAGCGACGGCGCCAGCTTCACCACACCTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCt > 2:1059164/1‑150 (MQ=255) tGATCTTCTGGTCCAGGTGCAGGTACGGGTAGTTTCCATCCACCGGCAGCGACGGCGCCAGCTTCACCACACCTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTgg > 2:609416/1‑150 (MQ=255) cttctGGTCCAGGTGCAGGTACGGGTAGTTTCCATCCACCGGCAGCGACGGCGCCAGCTTCACCACACCTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCAt > 2:768628/1‑150 (MQ=255) ccAGGTGCAGGTACGGGTAGTTTCCATCCACCGGCAGCGACGGCGCCAGCTTCACCACACCTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGa < 1:1044137/150‑1 (MQ=255) gTGCAGGTACGGGTAGTTTCCATCCACCGGCAGCGACGGCGCCAGCTTCACCACACCTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGACAGTTCTGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGAt > 1:10912/1‑150 (MQ=255) tccaCCGGCAGCGACGGCGCCAGCTTCACCACACCTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTg > 1:415392/1‑150 (MQ=255) cGGCAGCGACGGCGCCAGCTTCACCACACCTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTgg > 2:5460/1‑107 (MQ=255) cGGCAGCGACGGCGCCAGCTTCACCACACCTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTgg < 1:5460/107‑1 (MQ=255) cAGCTTCACCACACCTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTgcgc > 1:94195/1‑137 (MQ=255) cAGCTTCACCACACCTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTgcgc < 2:94195/137‑1 (MQ=255) cacaCCTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCtt > 2:881784/1‑120 (MQ=255) cacaCCTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCtt < 1:881784/120‑1 (MQ=255) ccTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTcacgcacg < 1:609416/150‑1 (MQ=255) cTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACgg > 1:5194/1‑150 (MQ=255) cTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCAGCCCGGCCATga < 2:890541/84‑2 (MQ=255) cTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCAGCCCGGCCATga > 1:890541/1‑83 (MQ=255) ccAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACGGTgc < 2:384310/150‑1 (MQ=255) ccggcgCCACTTCGCCGGTGGCACGGGCTACAGCGAGGATCATGACGGTCATCATGGCCGGGCTGGCCATCGGCAGGACGATTTTCCCGAGCGTATCGGCCTTGGTTGCGCCCCAAGCCAGCTAGCCTTCTCGCACGGTGTGCGGAATTc < 2:100409/149‑1 (MQ=255) aCTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGGCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACGGTGCGCGGAATTCGCGCCAgg > 1:651684/1‑150 (MQ=255) ttCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTgcgc > 2:1072034/1‑101 (MQ=255) ttCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTgcgc < 1:1072034/101‑1 (MQ=255) gcggcACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACGGTGCGCGGAATTCGCGCCAGGCCTTCTTCg > 1:222675/1‑150 (MQ=255) aCGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACGGTGCGCGGAATTCGCGCCAGGCCTTCTTCGGTGGc > 2:265576/1‑150 (MQ=255) aggCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACGGTGCGCGGAATTCGCGCCAGGCCTTCTTCGGTGGCCa > 1:876900/2‑150 (MQ=255) cacaGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACGGTGCGCGGAATTCGCGCCAGGCCTTCTTCGGTGGCCACGAt < 1:768628/150‑1 (MQ=255) acaGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACGGTGCGCGGAATTCGCGCCAGGCCTTCTTCGGTGGCCACGATc < 1:172728/150‑1 (MQ=255) ctgcccatGGCCAGCCCGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACGGTGCGCGGAATTCGCGCCAGGCCTTCTTCGGTGGCCACGATCACCACCGGTACCGCCAGc > 1:832650/6‑150 (MQ=255) tgcccatGGCCAGCCCGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACGGTGCGCGGAATTCGCGCCAg < 1:977283/105‑1 (MQ=255) tcatGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACGGTGCGCGGAATTCGCGCCAGGCCTTCTTCGGTGGCCACGATCACCACCGGTACCGCCAGCAATg > 2:1032523/1‑150 (MQ=255) tcatGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACGGTGCGCGGAATTCGCGCCAGGCCTTCTTCGGTGGCCACGATCACCACCGGTACCGCCAGCAATg < 1:1059164/150‑1 (MQ=255) tGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACGGTGCGCGGAATTCGCGCCAGGCCTTCTTCGGTGGCCACGATCACCACCGGTACCGCCAGCAATGCCa > 1:547189/1‑150 (MQ=255) tGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACGGTGCGCGGAATTCGCGCCAGGCCTTCTTCGGTGGCCACGATCACCACCCGGACCGCCAGCAATGCCa < 2:651684/150‑1 (MQ=255) ggCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACGGTGCGCGGAATTCGCGCCAGGCCTTCTTCGGTGGCCACGATCACCACCGGTACCGCCAGCAATGCCAg < 2:876900/150‑1 (MQ=255) gCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACGGTGCGCGGAATTCGCGCCAGGCCTTCTTCGGTGGCCACGATCACCACCGGTACCGCCAGCAATGCCAgg < 2:5194/150‑1 (MQ=255) | CATGATCTTCTGGTCCAGGTGCAGGTACGGGTAGTTTCCATCCACCGGCAGCGACGGCGCCAGCTTCACCACACCTACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGCCACAGCGAGGATCATGCCGGTCATCATGGCCGGGCTGGCCATGGGCAGGACGATTTTCCACAGGGTCTCGGCCTTGGTTGCGCCCAACGCCAGCGAGCCTTCACGCACGGTGCGCGGAATTCGCGCCAGGCCTTCTTCGGTGGCCACGATCACCACCGGTACCGCCAGCAATGCCAGG > NC_002947/6072815‑6073106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |