Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_002947 4,982,722 G→A T3I (ACC→ATC)  flgD ← flagellar basal‑body rod modification protein FlgD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,982,7220GA100.0% 520.3 / NA 144T3I (ACC→ATC) flgDflagellar basal‑body rod modification protein FlgD
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (67/77);  total (67/77)

Only 100 of 161 total aligned reads displayed.

TGGTTCTGCATCTGGGTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGGTGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCGGAGATCATGTCAGCCATCTCCTCGACCACATTGACGTTCGGG  >  NC_002947/4982575‑4982868
                                                                                                                                                   |                                                                                                                                                  
tggttctgCATCTGGGTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCTGGTATGCGCTGCCGACGTCTGTAGTGGAATtggtgatg                                                                                                                                                  <  2:2159068/150‑1 (MQ=255)
tggttctgCATCTGGGTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATtggtgatg                                                                                                                                                  <  2:3503120/150‑1 (MQ=255)
tggttctgCATCTGGGTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATtggtgatg                                                                                                                                                  <  2:4844190/150‑1 (MQ=255)
tggttctgCATCTGGGTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATtggtgatg                                                                                                                                                  <  1:4305735/150‑1 (MQ=255)
tggttctgCATCTGGGTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATtggtgatg                                                                                                                                                  <  1:5008563/150‑1 (MQ=255)
 ggttctgCATCTGGGTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATtggtgatgg                                                                                                                                                 >  1:2329060/1‑150 (MQ=255)
  gttctgCATCTGGGTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTggtgatggt                                                                                                                                                <  2:1683252/150‑1 (MQ=255)
   ttctgCATCTGGGTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTc                                                                                                                                               >  1:3928250/1‑150 (MQ=255)
     ctgCATCTGGGTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCAt                                                                                                                                             <  2:862160/150‑1 (MQ=255)
       gCATCTGGGTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGt                                                                                                                                           <  1:715341/150‑1 (MQ=255)
          tCTGGGTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCgg                                                                                                                                        <  2:4908369/150‑1 (MQ=255)
            tGGGTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCt                                                                                                                                      >  1:1318932/1‑150 (MQ=255)
            tGGGTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCt                                                                                                                                      <  1:261680/150‑1 (MQ=255)
             gggTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCtt                                                                                                                                     <  2:2882656/150‑1 (MQ=255)
             gggTGACCAGAAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCtt                                                                                                                                     >  1:1552007/1‑150 (MQ=255)
              ggTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTc                                                                                                                                    >  1:2971813/1‑150 (MQ=255)
              ggTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTc                                                                                                                                    <  2:1934683/150‑1 (MQ=255)
              ggTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTc                                                                                                                                    <  1:3876690/150‑1 (MQ=255)
               gTGACCAGCAACTGCAGGAACGCGTCCTTGCCCCGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTcc                                                                                                                                   >  2:1109610/1‑150 (MQ=255)
               gTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTcc                                                                                                                                   <  1:5092827/150‑1 (MQ=255)
                tGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCt                                                                                                                                  <  1:4234502/150‑1 (MQ=255)
                   ccAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATc                                                                                                                               >  1:2023693/1‑150 (MQ=255)
                    cAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCa                                                                                                                              <  1:4098559/150‑1 (MQ=255)
                    cAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCa                                                                                                                              >  1:967392/1‑150 (MQ=255)
                    cAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCa                                                                                                                              >  1:725453/1‑150 (MQ=255)
                     aGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCAc                                                                                                                             >  1:365900/1‑150 (MQ=255)
                     aGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCAc                                                                                                                             >  2:2496987/1‑150 (MQ=255)
                       cAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTg                                                                                                                           >  2:712565/1‑150 (MQ=255)
                        aaCTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGc                                                                                                                          <  2:1584824/150‑1 (MQ=255)
                        aaCTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGc                                                                                                                          <  2:2095972/150‑1 (MQ=255)
                         aCTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGcc                                                                                                                         <  2:4816462/150‑1 (MQ=255)
                         aCTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGcc                                                                                                                         <  1:1668586/150‑1 (MQ=255)
                          cTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTTAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGccc                                                                                                                        >  2:25825/1‑150 (MQ=255)
                           tGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGcccc                                                                                                                       >  1:5094790/1‑150 (MQ=255)
                             cAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAg                                                                                                                     <  2:3932767/150‑1 (MQ=255)
                             cAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAg                                                                                                                     >  1:496422/1‑150 (MQ=255)
                              aGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAgg                                                                                                                    <  1:415480/150‑1 (MQ=255)
                                gAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGt                                                                                                                  >  2:1376660/1‑150 (MQ=255)
                                  aCGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCa                                                                                                                <  1:1840109/150‑1 (MQ=255)
                                   cgcgTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAg                                                                                                               <  2:1853222/150‑1 (MQ=255)
                                    gcgTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGc                                                                                                              >  2:3695319/1‑150 (MQ=255)
                                      gTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCAc                                                                                                            >  1:4287127/1‑150 (MQ=255)
                                        ccTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACtt                                                                                                          >  2:3446544/1‑150 (MQ=255)
                                        ccTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACtt                                                                                                          >  2:2312747/1‑150 (MQ=255)
                                          ttGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTc                                                                                                        >  2:2231563/1‑150 (MQ=255)
                                          ttGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTc                                                                                                        >  1:1939041/1‑150 (MQ=255)
                                          ttGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGACAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTc                                                                                                        <  2:914600/150‑1 (MQ=255)
                                           tGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCt                                                                                                       <  2:4010415/150‑1 (MQ=255)
                                           tGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGGGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCt                                                                                                       <  1:4355836/150‑1 (MQ=255)
                                            gCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTg                                                                                                      <  1:1226349/150‑1 (MQ=255)
                                              ccAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGca                                                                                                    >  1:324398/1‑150 (MQ=255)
                                               cAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGcat                                                                                                   <  2:2525147/150‑1 (MQ=255)
                                                  cgcgcTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGcatcat                                                                                                <  2:5089499/150‑1 (MQ=255)
                                                  agctctaccGGCGCCGCCGGCAGCGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGcatcat                                                                                                >  2:2410738/8‑150 (MQ=255)
                                                  agctctaccGGCGCCGCCGGCAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGACTTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGcatcat                                                                                                >  1:4868344/8‑150 (MQ=255)
                                                    cgcTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGt                                                                                              <  1:1131859/150‑1 (MQ=255)
                                                     tctaccGGCGCCGCCGGCAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGtt                                                                                             >  2:2028410/5‑150 (MQ=255)
                                                       tGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTCTCACTGCCCCAGGGTCAGCACTGTCTGCATCATGTTCt                                                                                           >  2:3145035/1‑150 (MQ=255)
                                                       tGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCt                                                                                           >  2:4769123/1‑150 (MQ=255)
                                                       tGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCt                                                                                           >  2:3145402/1‑150 (MQ=255)
                                                        gCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCtt                                                                                          <  2:1710865/150‑1 (MQ=255)
                                                        gCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCtt                                                                                          <  1:3396215/150‑1 (MQ=255)
                                                         ccGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTCTGCGCTGCCGACGTCTGTAGTGGAATTGGTGAGGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTg                                                                                         >  2:3213528/1‑150 (MQ=255)
                                                           ggcggcGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGc                                                                                       <  1:4206087/150‑1 (MQ=255)
                                                              ggcgCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCgt                                                                                    <  1:1415506/150‑1 (MQ=255)
                                                              ggcgCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCgt                                                                                    <  1:1415538/150‑1 (MQ=255)
                                                                    ggTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTtcat                                                                              <  1:3706887/150‑1 (MQ=255)
                                                                    ggTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTATtcat                                                                              <  2:4774659/150‑1 (MQ=255)
                                                                        gagCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGt                                                                          <  2:4322869/150‑1 (MQ=255)
                                                                        gagCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGt                                                                          >  2:4666552/1‑150 (MQ=255)
                                                                         agCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCAACAGtt                                                                         >  2:1176646/1‑150 (MQ=255)
                                                                             gTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGc                                                                     >  1:2643789/1‑150 (MQ=255)
                                                                                 gTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTg                                                                 >  1:3818612/1‑150 (MQ=255)
                                                                                     tGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCt                                                             <  2:1650124/150‑1 (MQ=255)
                                                                                      ggACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTg                                                            >  2:3246105/1‑150 (MQ=255)
                                                                                         cGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGaaa                                                         <  2:4212465/150‑1 (MQ=255)
                                                                                           tCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGAGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAAcg                                                       >  1:4465488/1‑150 (MQ=255)
                                                                                             tGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAAcgcg                                                     >  1:1242799/1‑150 (MQ=255)
                                                                                               cTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTGGGTCTGAAAcgcgcg                                                   >  2:2767113/1‑150 (MQ=255)
                                                                                                ttCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCgg                                                  >  1:2169290/1‑150 (MQ=255)
                                                                                                      aGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCg                                            <  1:867751/150‑1 (MQ=255)
                                                                                                       gCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCgg                                           >  1:3048690/1‑150 (MQ=255)
                                                                                                       gCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCgg                                           >  2:3972165/1‑150 (MQ=255)
                                                                                                       gCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCgg                                           <  2:2795978/150‑1 (MQ=255)
                                                                                                        cGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCGga                                          <  2:2004513/150‑1 (MQ=255)
                                                                                                        cGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCGga                                          <  1:3499429/150‑1 (MQ=255)
                                                                                                        cGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCGga                                          <  2:646577/150‑1 (MQ=255)
                                                                                                            gTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCGGAGATc                                      <  2:4337172/150‑1 (MQ=255)
                                                                                                                ggTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCGGAGATCATGt                                  >  2:689134/1‑150 (MQ=255)
                                                                                                                     gcgcTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCGGAGATCATGTCAGcc                             <  2:3828676/150‑1 (MQ=255)
                                                                                                                       gcTGCCGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCGGAGATCATGTCAGCCAt                           <  2:43300/150‑1 (MQ=255)
                                                                                                                           ccGACGTCTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCGGAGATCATGTCAGCCATctcc                       >  1:2802827/1‑150 (MQ=255)
                                                                                                                                  cTGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCGGAGATCATGTCAGCCATCTCCTCGACca                >  2:3366502/1‑150 (MQ=255)
                                                                                                                                   tGTAGTGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCGGAGATCATGTCAGCCATCTCCTCGACcac               >  1:2546748/1‑150 (MQ=255)
                                                                                                                                        tGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCGGAGATCATGTCAGCCATCTCCTCGACCACATTGa          <  1:1222963/150‑1 (MQ=255)
                                                                                                                                        tGGAATTGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCGGAGATCATGTCAGCCATCTCCTCGACCACATTGa          >  1:2422779/1‑150 (MQ=255)
                                                                                                                                             ttGGTGATGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCGGAGATCATGTCAGCCATCTCCTCGACCACATTGACGTTc     >  2:3424312/1‑150 (MQ=255)
                                                                                                                                               ggtgatggtCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCGGAGATCATGTCAGCCATCTCCTCGACCACATTGACGTTCgg   <  2:5094790/150‑1 (MQ=255)
                                                                                                                                               ggtgatggtCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCGGAGATCATGTCAGCCATCTCCTCGACCACATTGACGTTCgg   <  2:925996/150‑1 (MQ=255)
                                                                                                                                                gtgatggtCATGTCGGCTTCCTATCACTGCCCCAGGGACAGCACTTTCTGCATCATGTTCTTGGCCGAGTTCATCAGTTCAGCGTTGGTCTGGAACGCGCGGCTGGCGGAGATCATGTCAGCCATCTCCTCGACCACATTGACGTTCggg  >  1:2703717/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
TGGTTCTGCATCTGGGTGACCAGCAACTGCAGGAACGCGTCCTTGCCCAGCGCGCTGCCGGCGGCGCCGGTAGAGCTGTCAGTCTTGGACGTCTGCTTCTGCAGCGAGGTCAGGTATGCGCTGCCGACGTCTGTAGTGGAATTGGTGGTGGTCATGTCGGCTTCCTATCACTGCCCCAGGGTCAGCACTTTCTGCATCATGTTCTTGGCCGTGTTCATCAGTTCAGCGTTGGTCTGAAACGCGCGGCTGGCGGAGATCATGTCAGCCATCTCCTCGACCACATTGACGTTCGGG  >  NC_002947/4982575‑4982868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑