| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 652785 | 34 (0.710) | 20 (0.490) | 17/228 | 1.6 | 58.1% | coding (1961/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | = 4808204 | 0 (0.000) | intergenic (‑268/‑287) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
TAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCA > NC_002947/652637‑652929 | tAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCa < 1:883168/150‑1 (MQ=255) ggAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGa > 2:355762/1‑150 (MQ=255) aTGAAAAACAGGCGGCGGATCGCGGACTCGCGAGGTGGGACGTGCCCGGGATGATAACGGATGCGCAGGAATAATTGGTCCGAAACAAACGTAGGGGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAAc < 1:605732/150‑1 (MQ=37) aaaaCAGGCGGCGCATGGCGGACTTGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTc < 1:72092/150‑1 (MQ=255) gctgACTCGCGACGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGc < 1:169045/147‑1 (MQ=255) tCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCg > 1:1002227/1‑150 (MQ=255) cgAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGccc < 2:665310/150‑1 (MQ=255) gAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCt > 1:1008814/1‑115 (MQ=255) gAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCt < 2:1008814/115‑1 (MQ=255) gAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTca > 2:1150567/1‑150 (MQ=255) gCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCt < 1:1150567/150‑1 (MQ=255) ggATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTcagca > 1:1071327/1‑132 (MQ=255) ggATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTcagca < 2:1071327/132‑1 (MQ=255) cccgcagGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgc < 2:568703‑M1/148‑73 (MQ=255) cgcAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacccctccgagtcgcggaaaatcccccgcagaacacgtccgaggagctc > 2:496779‑M1/1‑76 (MQ=255) gcAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTc > 1:235708/1‑133 (MQ=255) gcAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTc < 2:235708/133‑1 (MQ=255) cAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccagccgctgga > 2:343520‑M1/1‑74 (MQ=255) gAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGcc > 1:1047312/1‑150 (MQ=255) gAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGcc > 2:522627/1‑150 (MQ=255) aataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacc > 2:38807‑M1/1‑70 (MQ=255) aataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGtt < 2:180110/127‑1 (MQ=255) aataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGtt > 1:180110/1‑127 (MQ=255) taatTGGCCCGAAACAATCGGAGTAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCTGCGCTCGATCTCAGACCCTGAACGCTCGCTCCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTAAGCCCCTCGCCAAt < 2:311946/150‑1 (MQ=38) gCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGGGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccg > 2:8035‑M1/1‑62 (MQ=255) gCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccg < 1:8035‑M1/115‑54 (MQ=255) ccGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaa > 1:25763‑M1/1‑60 (MQ=255) ccGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccag > 2:220728‑M1/1‑60 (MQ=255) ccGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccag < 1:220728‑M1/96‑37 (MQ=255) ccGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCa < 2:239933/150‑1 (MQ=255) ccGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCa < 1:522627/150‑1 (MQ=255) ccGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTAAGAGCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCa > 1:913222/1‑150 (MQ=255) ccGAAACAAACGTAAGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGAGCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgacaatcccccggcgaacacctcccagccgctgaaaacctcccgccaac > 2:280434‑M1/1‑60 (MQ=255) aaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactatcccggcgaacacctcccaggcgctgaaaatcctccggcgaacacctcccaggcgctgaaaacctcccgccaaaaacctac > 1:1068588‑M1/1‑53 (MQ=255) acGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaa > 1:643275‑M1/1‑51 (MQ=255) acGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaa < 2:643275‑M1/95‑45 (MQ=255) acGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTcagc < 2:338448/101‑1 (MQ=255) acGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGANCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTcagc > 1:338448/1‑101 (MQ=255) tAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCAc < 2:1047312/150‑1 (MQ=255) ttcgCGGGTAAACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAg < 1:564345/74‑1 (MQ=25) ttcgCGGGTAAACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACCCCCTGCACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCCCCCTCTTTACGCCCCTCGCCAATGCGCTCCAGGTTGTCTTCAccc > 2:385244/4‑150 (MQ=38) gCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGt > 1:72441/1‑150 (MQ=255) gggTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgc < 1:280434‑M1/150‑110 (MQ=255) ggTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcg > 2:204544‑M1/1‑40 (MQ=255) gTTTACCCGCGAAGCGCCGCGCGGGCGNCGCTCGATCTCcnaggcgcngaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcga > 1:955772‑M1/1‑39 (MQ=255) gTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcga > 2:1032500‑M1/1‑39 (MQ=255) ccGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGt < 2:1197079/144‑1 (MQ=255) ccGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGt > 1:1197079/1‑144 (MQ=255) gcgAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgcc > 2:850220‑M1/1‑31 (MQ=255) gcgAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCcgc > 1:737977/1‑150 (MQ=255) gcgcCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgcccattg < 1:814221‑M1/150‑125 (MQ=255) gccgcGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgcccattgcc < 1:38807‑M1/150‑127 (MQ=255) cgcgcgGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTAAGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTgg < 1:355762/150‑1 (MQ=255) gcgggcggCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgcccattgccctata < 1:716737‑M1/150‑132 (MQ=255) ggcgCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctac > 2:440886‑M1/1‑13 (MQ=255) ggcgCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctac < 1:440886‑M1/110‑98 (MQ=255) ggcgCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAAtc < 1:419245/150‑1 (MQ=255) gATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgcccattgccctatacacaccgcgacac > 1:216719‑M1/1‑6 (MQ=255) tctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagc < 2:344727‑M1/111‑108 (MQ=255) tctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagc > 1:344727‑M1/1‑4 (MQ=255) | TAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCA > NC_002947/652637‑652929 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |