| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,993,647 | Δ1 bp | 8.5% | intergenic (+42/+56) | PP_1780 → / ← PP_1781 | mannosyltransferase/acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,993,647 | 0 | A | . | 8.5% | 140.2 / 7.6 | 47 | intergenic (+42/+56) | PP_1780/PP_1781 | mannosyltransferase/acyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (20/23); new base . (2/2); total (22/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.60e-01 | |||||||||||
CTACATTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAACAGGC > NC_002947/1993507‑1993785 | cTACATTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTg > 2:1314524/1‑150 (MQ=255) tGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCatat < 2:752654/150‑1 (MQ=255) aGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGAc > 2:898342/1‑150 (MQ=255) tAACACGCCTGGTGTTGGATGTTACGGAAAATACTCAGATGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGACCCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGa < 1:845623/150‑1 (MQ=255) tAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCatat > 2:178382/1‑139 (MQ=255) tAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCatat < 1:178382/139‑1 (MQ=255) tAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGa > 2:1133514/1‑150 (MQ=255) tAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGa < 1:1133514/150‑1 (MQ=255) cTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCa < 2:211461/150‑1 (MQ=255) ggTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGt > 1:132387/1‑150 (MQ=255) ttGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCa < 1:1396929/105‑1 (MQ=255) ttGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCa > 2:1396929/1‑105 (MQ=255) tGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTTAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAAcg < 1:1218465/150‑1 (MQ=255) ggAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCg > 1:195285/1‑150 (MQ=255) aCTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACgg < 1:1314524/150‑1 (MQ=255) tCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATc > 2:577077/1‑139 (MQ=255) tCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATc < 1:577077/139‑1 (MQ=255) cTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAg > 2:158521/1‑150 (MQ=255) aaGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACTCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCt < 2:726624/150‑1 (MQ=255) tAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGa > 2:1252443/1‑150 (MQ=255) aGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCa > 2:430829/1‑110 (MQ=255) aGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCa < 1:430829/110‑1 (MQ=255) cTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAg > 2:1063765/1‑150 (MQ=255) tCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGa < 1:835347/150‑1 (MQ=255) tCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTAGCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGa > 1:161141/1‑150 (MQ=255) gcACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGt > 2:906561/1‑150 (MQ=255) cACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACg < 2:1016666/116‑1 (MQ=255) cACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACg > 1:1016666/1‑116 (MQ=255) aTTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGcc > 2:51140/1‑150 (MQ=255) ttGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCg < 2:195285/150‑1 (MQ=255) tGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCgg < 1:1252443/150‑1 (MQ=255) gCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTcc > 2:1077096/1‑150 (MQ=255) tGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTccagc < 1:158521/150‑1 (MQ=255) ggCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTccagcc < 1:51140/150‑1 (MQ=255) ccatccatGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCCGGATTTTTGACGGATGAGTGGTATTATGCACGCAGTAGCCGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTccagccag < 1:1028650/150‑1 (MQ=255) atccatGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATcc > 1:1131420/1‑87 (MQ=255) atccatGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATcc < 2:1131420/87‑1 (MQ=255) atGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGc > 1:1272523/1‑103 (MQ=255) atGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGc < 2:1272523/103‑1 (MQ=255) aaCCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACgcgc < 1:395291/74‑1 (MQ=255) aaCCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACgcgc > 2:395291/1‑74 (MQ=255) tGCAGTGCGGCTGC‑GCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGc > 1:33826/1‑95 (MQ=38) tGCAGTGCGGCTGC‑GCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGc < 2:33826/95‑1 (MQ=38) tGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAACAg < 1:1063765/150‑1 (MQ=255) gCAGTGCGGCTGC‑GCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCAc > 2:1136262/1‑55 (MQ=21) gCAGTGCGGCTGC‑GCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCAc < 1:1136262/55‑1 (MQ=21) cAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGCGGCACGCAGTAAACGCGCTTAGCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAACAGGc < 2:161141/150‑1 (MQ=255) | CTACATTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAACAGGC > NC_002947/1993507‑1993785 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |