Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,531,396:1 +C 7.2% coding (522/630 nt) PP_1344 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,531,3961.C 7.2% 271.7 / 14.7 69coding (522/630 nt)PP_1344hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (36/28);  new base C (3/2);  total (39/30)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.32e-01

TCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCC  >  NC_002947/1531251‑1531545
                                                                                                                                                  |                                                                                                                                                      
tctctAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCt                                                                                                                                                    >  1:1214343/1‑150 (MQ=255)
   ctAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCgg                                                                                                                                                 <  2:1249175/150‑1 (MQ=255)
       ttCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCCGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGc                                                                                                                                             >  2:270512/1‑150 (MQ=255)
         cATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCAt                                                                                                                                           <  2:328215/150‑1 (MQ=255)
             aaGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGccc                                                                                                                                       <  2:1177338/150‑1 (MQ=255)
             aaGGCCACCCGAAGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGACAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGccc                                                                                                                                       >  2:1262995/1‑150 (MQ=255)
               ggCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGc                                                                                                                                     >  2:579583/1‑150 (MQ=255)
                  cACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCAc                                                                                                                                  >  1:479894/1‑150 (MQ=255)
                    cccgaaggTGGCCTTTTTTATACCTTGCCCTTGCCGTACGCTGCAATCCCTTCCAGTGCGGCACGCAGTTTTGGGTCGGTAATGCCCTCAGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGc                                                                                                                                <  2:447555/144‑1 (MQ=255)
                            tGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCgg                                                                                                                        >  2:158354/1‑150 (MQ=255)
                              gCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTa                                                                                                                      >  1:35459/1‑150 (MQ=255)
                                cTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGc                                                                                                                           >  2:411703/1‑143 (MQ=255)
                                cTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGc                                                                                                                           <  1:411703/143‑1 (MQ=255)
                                 ttttttATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCa                                                                                                                   <  2:986471/150‑1 (MQ=255)
                                 ttttttATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCa                                                                                                                   >  1:763639/1‑150 (MQ=255)
                                 ttttttATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCa                                                                                                                   >  1:542918/1‑150 (MQ=255)
                                 ttttttATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGAGCT‑TTCGAACAGCGCGGCCgaga                                                                                                                                           <  2:541553/126‑4 (MQ=255)
                                 ttttttATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGAGCT‑TTCGAACAGCGCGGCCgaga                                                                                                                                           >  1:541553/1‑123 (MQ=255)
                                           cTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTg                                                                                                         >  2:286727/1‑150 (MQ=255)
                                               cccTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTAcc                                                                                                     <  2:763639/150‑1 (MQ=255)
                                                         gggCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGa                                                                                           <  2:222299/150‑1 (MQ=255)
                                                              gccAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCtt                                                                                                   <  2:60279/137‑1 (MQ=255)
                                                              gccAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCtt                                                                                                   >  1:60279/1‑137 (MQ=255)
                                                               ccAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGcc                                                                                                                                               >  2:851380/1‑92 (MQ=255)
                                                               ccAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGcc                                                                                                                                               <  1:851380/92‑1 (MQ=255)
                                                                cAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCt                                                                                    <  2:479894/150‑1 (MQ=255)
                                                                  aCCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGa                                                                                  <  1:1352407/150‑1 (MQ=255)
                                                                    cGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAgg                                                                                <  1:158354/150‑1 (MQ=255)
                                                                     gTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAggg                                                                               >  1:942733/1‑149 (MQ=255)
                                                                          aGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCg                                                                          >  2:820500/1‑150 (MQ=255)
                                                                                 cACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGAGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCtt                                                                   >  2:564659/1‑150 (MQ=255)
                                                                                  aCGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTc                                                                  >  1:614519/1‑150 (MQ=255)
                                                                                   cGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTc‑c                                                                <  2:614519/150‑1 (MQ=255)
                                                                                     cAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CAt                                                              >  2:419224/1‑150 (MQ=255)
                                                                                        tttGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGc                                                           >  2:783056/1‑150 (MQ=255)
                                                                                             ggTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCa                                                      >  1:405026/1‑150 (MQ=255)
                                                                                               tCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAg                                                                                 >  1:1189077/1‑122 (MQ=255)
                                                                                               tCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAg                                                                                 <  2:1189077/122‑1 (MQ=255)
                                                                                               tCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAgg                                                    <  1:579583/150‑1 (MQ=255)
                                                                                                 ggTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGgc                                                  >  1:1186818/1‑150 (MQ=255)
                                                                                                   tAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGATGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGCTGCGCTGGACGTTGCCGAATGCTTC‑CATGGCCTGCAGGgccg                                                >  2:824636/1‑150 (MQ=255)
                                                                                                         ccTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCcaaca                                          >  2:1336447/1‑150 (MQ=255)
                                                                                                          cTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCcaacaa                                         <  2:763546/150‑1 (MQ=255)
                                                                                                           tCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAgg                                                                                <  2:120218/111‑1 (MQ=255)
                                                                                                           tCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAgg                                                                                >  1:120218/1‑111 (MQ=255)
                                                                                                            cggcgtTGAGGCGCGGGATCGCGGCCTGGCTGTTCGAA‑AGCGCGTCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGTGCCGCCAACAAgc                                       <  2:107927/150‑1 (MQ=255)
                                                                                                            cggcggTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAgc                                       <  1:35095/150‑1 (MQ=255)
                                                                                                                      gcgcAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCcaacaa                                         <  2:1318901/138‑1 (MQ=255)
                                                                                                                      gcgcAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCcaacaa                                         >  1:1318901/1‑138 (MQ=255)
                                                                                                                      gcgcAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTctgctg                             >  2:638057/1‑150 (MQ=255)
                                                                                                                      gcgcAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTctgctg                             >  1:450161/1‑150 (MQ=255)
                                                                                                                       cgcAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTgg                            <  2:542918/150‑1 (MQ=255)
                                                                                                                               ctcGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGCAT‑CCAAGGTCAGCGCAGGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAg                    >  2:37160/1‑150 (MQ=255)
                                                                                                                                 cGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGc                  <  2:1186818/150‑1 (MQ=255)
                                                                                                                                   gCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTGCCGAATGCTCGTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCgg                >  2:630063/1‑150 (MQ=255)
                                                                                                                                    ccGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCggg               <  2:450161/150‑1 (MQ=255)
                                                                                                                                    ccGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CANGGCNTGNAGGGCCGCCAACNAGCGCTTCTGCTGGTAGCGCAGGCggg               <  1:1336447/150‑1 (MQ=255)
                                                                                                                                     ccgagctttCGAACAGCGCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCggg               >  1:413528/8‑150 (MQ=255)
                                                                                                                                     ccgagctttCGAACAGCGCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCggg               <  2:413528/143‑1 (MQ=255)
                                                                                                                                        gcTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGaa                                                                        <  1:378219/90‑1 (MQ=255)
                                                                                                                                        gcTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGaa                                                                        >  2:378219/1‑90 (MQ=255)
                                                                                                                                        gcTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGc           >  1:759951/1‑150 (MQ=255)
                                                                                                                                         gctttCGAACAGCGCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGc           >  1:566722/4‑150 (MQ=255)
                                                                                                                                            ttCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCaa       <  2:759951/150‑1 (MQ=255)
                                                                                                                                               gAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAg                         <  2:993142/129‑1 (MQ=255)
                                                                                                                                               gAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAg                         >  1:993142/1‑129 (MQ=255)
                                                                                                                                               gAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGTTTGCCCAATgg    >  2:663002/1‑150 (MQ=255)
                                                                                                                                               gAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATgg    >  2:480103/1‑150 (MQ=255)
                                                                                                                                               gAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATgg    >  2:125540/1‑150 (MQ=255)
                                                                                                                                                 a‑aGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGcc  <  1:572105/150‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                      
TCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAA‑AGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTC‑CATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCC  >  NC_002947/1531251‑1531545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑