| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 95630 | 43 (0.820) | 18 (0.370) | 11/228 | NT | 29.1% | intergenic (+22/+50) | PP_0087/PP_0088 | hypothetical protein/alkanal monooxygenase |
| ? | NC_002947 | = 95664 | 48 (0.990) | intergenic (+56/+16) | PP_0087/PP_0088 | hypothetical protein/alkanal monooxygenase | |||||
ATTGCGGCCAAGCTGGATGCCAAGGGCGTCACTGGCTACAAGCTGGAGATCGTCAAGAAAGGCGAGCCGGCGGGCAAGGTGATTGGTAGCTGCGAGGCCGGTACCAAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/95477‑95630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgggctCGCCCGCTCCCATAGGTTGACTTGGGAGCGAGCAAGCCCGCGAATGAGCAAACACATTAGCCGCGGCGGTAAACAATCTCCTTGGTACCGGCCTCGCAGCTACCAATCACCTTGCCCGCCGGCTCGCCTTTCTTGACGATCTCCAGCTT < NC_002947/95664‑95516 ATTGCGGCCAAGCTGGATGCCAAGGGCGTCACTGGCTACAAGCTGGAGATCGTCAAGAAAGGCGAGCCGGCGGGCAAGGTGATTGGTAGCTGCGAGGCCGGTACCAAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCG < 2:263606/150‑1 TTGCGGCCAAGCTGGATGCCAAGGGCGTCACTGGCTACAAGCTGGAGATCGTCAAGAAAGGCGAGCCGGCGGGCAAGGTGATTGGTAGCTGCGAGGCCGGTACCAAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGG > 1:897779/1‑150 GTCACTGGCTACAAGCTGGAGATCGTCAAGAAAGGCGAGCCGGCGGGCAAGGTGATTGGTAGCTGCGAGGCCGGTACCAAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCTTGCCCGCTCCCATAGGTTGACTT > 2:335376/1‑150 CACGGGCTACAAGCTGGAGATCGTCAAGAAAGGCGCGCCGGTGGGCAAGGTGATTGGTAGCTGCGAGGCCGGTACCAAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTTGCGGGCTCGCCCGCTCCCATAGGTTGACTTGG < 2:944149/150‑1 GCTACAAGCTGGAGATCGTCAAGAAAGGCGAGCCGGCGGGCAAGGTGATTGGTAGCTGCGAGGCCGGTACCAAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCTCGCCCGCTCCCATAGGTTGACTTGGGAGCG > 2:310098/1‑150 CTACAAGCTGGAGATCGTCAAGAAAGGCGAGCCGGCGGGCAAGGTGATTGGTAGCTGCGAGGCCGGTACCAAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCTTGCTCGCTCCCATAGGTTGACTTGGGAGCGA < 2:897779/150‑1 CTACAAGCTGGAGATCGTCAAGAAAGGCGAGCCGGCGGGCAAGGTGATTGGTAGCTGCGAGGCCGGTACCAAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCTTGCCCGCTCCCATAGGTTGACTTGGGAGCGA < 1:335376/150‑1 CTACAAGCTGGAGAGCGGCAAAAAAGGCGAGCCGGCGGGCAAGGTGATTGGTAGCTGCGAGGCCGGTACCAAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCCGGCTGCCCCGCTCCCATAGGTTGACTTGGGAGCGA < 1:310098/150‑1 GTCAAGAAAGGCGAGCCGGCGGGCAAGGTGATTGGTAGCTGCGAGGCCGGTACCAAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCTCGCCCGCTCCCATAGGTTGACTTGGGAGCGAGCAAG > 1:439348/1‑139 GTCAAGAAAGGCGAGCCGGCGGGCAAGGTGATTGGTAGCTGCGAGGCCGGTACCAAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCTCGCCCGCTCCCATAGGTTGACTTGGGAGCGAGCAAG < 2:439348/139‑1 AAGGTGATTGGTAGCTGCGAGGCCGGTACCAAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCTCGCCCGCTCCCATAGGTTGACTTGGGAGCGA < 1:855207/110‑1 AAGGTGATTGGTAGCTGCGAGGCCGGTACCAAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCTCGCCCGCTCCCATAGGTTGACTTGGGAGCGA > 2:855207/1‑110 TTGGTAGCTGCGAGGCCGGTACCAAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCTCGCCCGCTCCCATAGGTTGACTTGGGAGCGA > 2:1214548/1‑103 TTGGTAGCTGCGAGGCCGGTACCAAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCTCGCCCGCTCCCATAGGTTGACTTGGGAGCGA < 1:1214548/103‑1 AAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCTTGCCCGCTCCCATAGGTTGACTTGGGAGCGA > 1:331427/1‑80 AAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCTTGCCCGCTCCCATAGGTTGACTTGGGAGCGA < 2:331427/80‑1 AAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCTCGCCCGCTCCCATAGGTTGACTTGGGAGCGAGCAAGCCCGCGAATGA > 2:1014970/1‑96 AAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCTCGCCCGCTCCCATAGGTTGACTTGGGAGCGAGCAAGCCCGCGAATGA < 1:1014970/96‑1 AAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCTCGCCCGCTCCCATAGGTTGACTTGGGAGCGAGC < 2:1075714/82‑1 AAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCTCGCCCGCTCCCATAGGTTGACTTGGGAGCGAGC > 1:1075714/1‑82 GGGCTCGCCCGCTCCCATAGGTTGACTTGGGAGCGAGCAAGCCCGCGAATGAGCAAACACATTAGCCGCGGCGGTAAACAATCTCCTTGGTACCGGCCTCGCAGCTACCAAGCACCTTGCCCGCCGGCTCGCCTTTCTTGACGATCTCCA < 1:1019224/150‑1 TCGCCCGCTCCCATAGGTTGACTTGGGAGCGAGCAAGCCCGCGAATGAGCAAACACATTAGCCGCGGCGGTAAACAATCTCCTTGGTACCGGCCTCGCAGCTACCAATCACCTTGCCCGGGGACGCGCCTTTCTTGACGATCTCCAGCTT > 1:360982/1‑150 ATTGCGGCCAAGCTGGATGCCAAGGGCGTCACTGGCTACAAGCTGGAGATCGTCAAGAAAGGCGAGCCGGCGGGCAAGGTGATTGGTAGCTGCGAGGCCGGTACCAAGGAGATTGTTTACCGCCGCGGCTAATGTGTTTGCTCATTCGCGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/95477‑95630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgggctCGCCCGCTCCCATAGGTTGACTTGGGAGCGAGCAAGCCCGCGAATGAGCAAACACATTAGCCGCGGCGGTAAACAATCTCCTTGGTACCGGCCTCGCAGCTACCAATCACCTTGCCCGCCGGCTCGCCTTTCTTGACGATCTCCAGCTT < NC_002947/95664‑95516 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |