| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 141714 = | 60 (1.140) | 3 (0.060) | 3/230 | NT | 5.0% | coding (133/1347 nt) | algB | alginate biosynthesis transcriptional regulator AlgB |
| ? | NC_002947 | 141770 = | 57 (1.160) | coding (77/1347 nt) | algB | alginate biosynthesis transcriptional regulator AlgB | |||||
CCAAGGCCGAATTCTGCTGGTGGATGACGAGTCCGCGATCCTGCGCACGTTCCGCTACTGCCTGGAAGACGAGGGCTACAGCGTGGCCACGGCGAACAGCGCCGCCCAGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/141826‑141714‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcagTAGCGGAACGTGCGCAGGATCGCGGACTCGTCATCCACCAGCAGAATTCGGCCTTGGTTGTCCTGGGCTGATTCCATTTCCTGTGCTCCTTAGGGAAAGATCTTTATTTAGTGTGGGAAAAATCGGGCAAGTTGCATGGTCAATTC > NC_002947/141770‑141915 CCAAGGCCGAATTCTGCTGGTGGATGACGAGTCCGCGATCCTGCGCACGTTCCGCTACTGCCTGGAAGACGAGGGCTACAGCGTGGCCACGGCGAACAGCGCCGCCCAGG < 1:119415/110‑1CCAAGGCCGAATTCTGCTGGTGGATGACGAGTCCGCGATCCTGCGCACGTTCCGCTACTGCCTGGAAGACGAGGGCTACAGCGTGGCCACGGCGAACAGCGCCGCCCAGG > 2:119415/1‑110 CGCTACTGCCTGGAAGACGAGGGCTACAGCGTGGCCACGGCGAACAGCGCCGCCCAGGCAGTAGCGGAACGTGCGCAGGATCGCGGACTCGTCATCCACCAGCAGAATTCGGCCTTGGTTGTCCTGGGCTGATTCCATTTCCTGTGCTCC > 1:378167/1‑150 GGGCTACAGCGTGGCCACGGCGAACAGCGCCGCCCAGGCAGTAGCGGAACGTGCGCAGGATCGCGGACTCGTCATCCACCAGCAGAATTCGGCCTTGGTTGTCCTGGGC > 1:68631/1‑109 GGGCTACAGCGTGGCCACGGCGAACAGCGCCGCCCAGGCAGTAGCGGAACGTGCGCAGGATCGCGGACTCGTCATCCACCAGCAGAATTCGGCCTTGGTTGTCCTGGGC < 2:68631/109‑1 GCCCAGGCAGTAGCGGAACGTGCGCAGGATCGCGGACTCGTCATCCACCAGCAGAATTCGGCCTTGGTTGTCCTGGGCTGATTCCATTTCCTGTGCTCCTTAGGGAAAGATCTTTATTTAGTGTGGGAAAAATCGGGCAAGTTGCATGGT < 2:378167/150‑1 CAGGCAGTAGCGGAACGTGCGCAGGATCGCGGACTCGTCATCCACCAGCAGAATTCGGCCTTGGTTGTCCTGGGCTGATTCCATTTCCTGTGCTCCTTAGGGAAAGATCTTTATTTAGTGTGGGAAAAATCGGGCAAGTTGCATGGTCAA > 2:563888/1‑150 AGGCAGTAGCGGAACGTGCGCAGGATCGCGGACTCGTCATCCACCAGCAGAATTCGGCCTTGGTTGTCCTGGGCTGATTCCATTTCCTGTGCTCCTTAGGGAAAGATCTTTATTTAGTGTGGGAAAAATCGGGCAAGTTGCATGGTCAAT > 2:976821/1‑150 GCAGTAGCGGAACGTGCGCAGGATCGCGGACTCGTCATCCACCAGCAGAATTCGGCCTTGGTTGTCCTGGGCTGATTCCATTTCCTGTGCTCCTTAGGGAAAGATCTTTATTTAGTGTGGGAAAAATCGGGCAAGTTGCATGGTCAATTC > 2:240719/1‑150 CCAAGGCCGAATTCTGCTGGTGGATGACGAGTCCGCGATCCTGCGCACGTTCCGCTACTGCCTGGAAGACGAGGGCTACAGCGTGGCCACGGCGAACAGCGCCGCCCAGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/141826‑141714‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcagTAGCGGAACGTGCGCAGGATCGCGGACTCGTCATCCACCAGCAGAATTCGGCCTTGGTTGTCCTGGGCTGATTCCATTTCCTGTGCTCCTTAGGGAAAGATCTTTATTTAGTGTGGGAAAAATCGGGCAAGTTGCATGGTCAATTC > NC_002947/141770‑141915 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |