New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 282335	79 (1.500)	6 (0.130) +TTGGTATGTTCT	6/222	NT	8.1%	intergenic (+54/‑216)	PP_0228/betT‑II	serine acetyltransferase/choline/carnitine/betaine transporter
	?	NC_002947	= 4282157	71 (1.350)					intergenic (‑690/+28)	PP_3751/PP_3753	cyanate transporter/AraC family transcriptional regulator

GCTGACTCGCAGTGTGCCGGCTGAAAGCAACATTACTCAGGCCAACCTGCAGCTGGACTGCCAGGACAAGAACTGATCCCGCAGTGCAATTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/282206‑282335 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGTAGGAGCGGGCTTGCCCGCGAATAGGCCAGCACAG  <  NC_002947/4282157‑4282120                                                                                                                                   ||||||||||||                                       GCTGACTCGCAGTGTGCCGGCTGAAAGCAACATTACTCAGGCCAACCTGCAGCTGGACTGCCAGGACAAGAACTGATCCCGCAGTGCAATTGCCTGTGCCGGCCTTTTCGCGGGTTAGCCCTCCCCTACATTGGTATGTTCTTTGTAGGA                                >  2:563179/1‑150     ACTCGCAGTGTGCCGGCTGAAAGCAACATTACTCAGGCCAACCTGCAGCTGGACTGCCAGGACAAGAACTGATCCCGCAGTGCAATTGCCTGTGCCGGCCTTTTCGCGGGTTAGCCCTCCCCTACATTGGTATGTTCTTTGTAGGAGCGG                            <  1:563179/150‑1                                     TCAGGCCAACCTGCAGCTGGACTGCCAGGACAAGAACTGATCCCGCAGTGCAATTGCCTGTGCTGGCCTCTTCGCGGGTTAGCCCTCCCCTACATTGGTATGTTCTTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAG  <  1:433417/144‑1                                     TCAGGCCAACCTGCAGCTGGACTGCCAGGACAAGAACTGATCCCGCAGTGCAATTGCCTGTGCTGGCCTCTTCGCGGGTTAGCCCTCCCCTACATTGGTATGTTCTTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAG  >  2:433417/1‑144                                                TGCAGCTGGACTGCCAGGACAAGAACTGATCCCGCAGTGCAATTGCCTGCTCCGGCCTTTTCGCGGGTTAGCCCTCCCCTACATTGGTATGTTCTTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACA   <  1:1395859/132‑1                                                TGCAGCTGGACTGCCAGGACAAGAACTGATCCCGCAGTGCAATTGCCTGCTCCGGCCTTTTCGCGGGTTAGCCCTCCCCTACATTGGTATGTTCTTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACA   >  2:1395859/1‑132                                                                                                                                   ||||||||||||                                       GCTGACTCGCAGTGTGCCGGCTGAAAGCAACATTACTCAGGCCAACCTGCAGCTGGACTGCCAGGACAAGAACTGATCCCGCAGTGCAATTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/282206‑282335 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGTAGGAGCGGGCTTGCCCGCGAATAGGCCAGCACAG  <  NC_002947/4282157‑4282120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.