New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	295700 =	87 (1.660)	9 (0.190)	9/218	NT	11.8%	intergenic (+47/+95)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator
	?	NC_002947	295759 =	57 (1.230)					intergenic (+106/+36)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator

AAGCGGGTGTTCGAAGCGTATCTGGGGTTGTATCTGCCGCCGTTTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/295860‑295700 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCGCTTGCCTTCCTCGGCCATGCGCGGGGTGATCGCCTCGTGCAGCTGCACC  >  NC_002947/295759‑295906                                                                                                                                                                                                                                                                                                                       AAGCGGGTGTTCGAAGCGTATCTGGGGTTGTATCTGCCGCCGTTTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCCCACTCAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTTCCTG                                                                                                                                                                 >  1:373403/1‑150   GCGGGTGTTCGAAGCGTATCTGGGGTTGTATCTGCCGCCGTTTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTG                                                                                                                                                               >  1:659254/1‑150    CGGGTGTTCGAAGCGTATCTGGGGTTGTATCTGCCGCCGTTTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGG                                                                                                                                                              <  2:1426337/150‑1     GGGTGTTCGAAGCGTATCTGGGGTTGTATCTGCCGCCGTTTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGG                                                                                                                                                             >  2:208752/1‑150                                        CCGTTTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGG                                                                                                                                                              >  2:358595/1‑114                                        CCGTTTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGG                                                                                                                                                              <  1:358595/114‑1                                            TTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGG                                                                                                                                                       <  2:801184/117‑1                                            TTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGG                                                                                                                                                       >  1:801184/1‑117                                                   CAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGT                                                                                                                                                                <  2:990052/101‑1                                                   CAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGT                                                                                                                                                                >  1:990052/1‑101                                                                                       GGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGGCGTGCCGGCGAAGGGCTGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAA                                                                           >  2:308396/1‑150                                                                                        GCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAAC                                                                          >  2:1398718/1‑150                                                                                                             TCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGGCGTGCCGGCGAAGGGCTGCAAAGCAGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACC                                                     >  2:1210071/1‑150                                                                                                              CCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCC                                                    >  1:115688/1‑150                                                                                                                   AGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGAT                                                                                                                     <  2:1023058/80‑1                                                                                                                   AGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGAT                                                                                                                     >  1:1023058/1‑80                                                                                                                     AGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGA                                                                    <  2:1277441/127‑1                                                                                                                     AGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGA                                                                    >  1:1277441/1‑127                                                                                                                                       AGCTTGCGAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCGCTTGCCTTCCTCGGCCATGCGCGG                           <  1:1398718/150‑1                                                                                                                                                      GTGGGAGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCGCTTGCCTTCCTCGGCCATGCGCGGGGTGATCGCCTCGTG            <  2:254863/150‑1                                                                                                                                                      GTGGGAGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGC                                                               >  1:937180/1‑99                                                                                                                                                      GTGGGAGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGC                                                               <  2:937180/99‑1                                                                                                                                                           AGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCGCTTGCCTTCCTCGGCCATGCGCGGGGTGATCGCCTCGTGCAGCT       >  2:501833/1‑150                                                                                                                                                             CGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCGCTTGCCTTCCTCGGCCATGCGCGGGGTGATCGCCTCGTGCAGCTGC     <  1:869517/150‑1                                                                                                                                                               GGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCGCTTGCCTTCCTCGGCCATGCGCGGGGTGATCGCCTCGTGCAGCTGCAC   <  1:1290819/150‑1                                                                                                                                                               GGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCGCTTGCCTTCCTCGGCCATGCGCGGGGTGATCGCCTCGTGCAGCTGCAC   <  1:1052545/150‑1                                                                                                                                                                GCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACGCCCGCTTGCCTTCCTCGGCCATGCGCGGGGTGATCGCCTCGTGCAGCTGCACC  >  1:655058/1‑150                                                                                                                                                                GCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGAGTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCGCTTGCCTTCCTCGGCCATGCGCGGGGTGATCGCCTCGTGCAGCTGCACC  >  2:105842/1‑150                                                                                                                                                                 CTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATAC                                                                             <  1:566873/74‑1                                                                                                                                                                 CTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATAC                                                                             >  2:566873/1‑74                                                                                                                                                                                                                                                                                                                       AAGCGGGTGTTCGAAGCGTATCTGGGGTTGTATCTGCCGCCGTTTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/295860‑295700 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCGCTTGCCTTCCTCGGCCATGCGCGGGGTGATCGCCTCGTGCAGCTGCACC  >  NC_002947/295759‑295906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.