New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	316005 =	61 (1.160)	8 (0.180)	8/210	NT	13.9%	intergenic (+17/+66)	cysQ/PP_0262	3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein
	?	NC_002947	316053 =	47 (1.050)					intergenic (+65/+18)	cysQ/PP_0262	3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein

CGTGGGCGGGCACGGTTGACGTTGGAGACCACGGTGAGCAATGACGGCAGTGACGAGCCGGCGGTGAGGTTCAGCGGCCAGTACGTTCTGCACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/316169‑316005 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaaggccgctcccacaAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCGCTCCC  >  NC_002947/316053‑316198                                                                                                                                                                                                                                                                                                                         CGTGGGCGGGCACGGTTGACGTTGGAGACCACGGTGAGCAATGACGGCAGTGACGAGCCGGCGGTGAGGTTCAGCGGCCAGTACGTTCTGCACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGC                                                                                                                                                                   <  2:586769/150‑1     GGCGGGCACGGTTGACGTTGGAGACCACGGTGAGCAATGACGGCAGTGACGAGCCGGCGGTGAGGTTCAGCGGCCAGTACGTTCTGCACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAGG                                                                                                                                                               <  2:13040/150‑1      GCGGGCACGGTTGACGTTGGAGACCACGGTGAGCAATGACGGCAGTGACGAGCCGGCGGTGAGGTTCAGCGGCCAGTACGTTCTGCACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAGGC                                                                                                                                                              <  2:834800/150‑1       CGGGCACGGTTGACGTTGGAGACCACGGTGAGCAATGACGGCAGTGACGAGCCGGCGGTGAGGTTCAGCGGCCAGTACGTTCTGCACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAGGCC                                                                                                                                                             <  1:1248777/150‑1                  GACGTTGGAGACCACGGTGAGCAATGACGGCAGTGACGAGCCGGCGGTGAGGTTCAGCGGCCAGTACGTTCTGCACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAGGCCGCTCCCACAAA                                                                                                                                                  <  2:1041861/150‑1                                                                     GTTCAGCGGCCAGTACGTTCTGCACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGAC                                                                                                                                                                     >  2:672185/1‑80                                                                     GTTCAGCGGCCAGTACGTTCTGCACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGAC                                                                                                                                                                     <  1:672185/80‑1                                                                                                                                GCCTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGC                                    >  1:483075/1‑150                                                                                                                                 CCTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTG                                                            <  2:1167846/125‑1                                                                                                                                 CCTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGGACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTG                                                            >  1:1167846/1‑125                                                                                                                                  CTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAAC                                                                                                                   >  1:1237875/1‑69                                                                                                                                  CTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAAC                                                                                                                   <  2:1237875/69‑1                                                                                                                                   TTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCA                                 >  1:851459/1‑150                                                                                                                                   TTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAGGCCGCGT                                                                                                                                          <  2:348869/45‑1                                                                                                                                   TTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAGGCCGCGT                                                                                                                                          >  1:348869/1‑45                                                                                                                                                     GCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTC               >  2:291864/1‑150                                                                                                                                                      CAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCA              <  1:571933/150‑1                                                                                                                                                      CAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCA              <  2:851459/150‑1                                                                                                                                                       AAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAG             >  2:637238/1‑150                                                                                                                                                          GCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGGACCTCAACGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCACACGTCAACCGTGCCCGCCGACGCAGCTGGTACAGGGTCAGGAA          >  2:145820/1‑150                                                                                                                                                           CCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAAC         <  1:586769/150‑1                                                                                                                                                           CCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAAC         <  1:1254849/150‑1                                                                                                                                                            CGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACC        <  1:13040/150‑1                                                                                                                                                             GCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCG       <  2:1366951/150‑1                                                                                                                                                              CTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCGC      <  1:834800/150‑1                                                                                                                                                                 CCACAAAGGCCGCGTTAGTCGTACTAGGCGTTCAGAACGTACTGGCCGGTGACCCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCGCTCC   <  2:156645/150‑1                                                                                                                                                                 CCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCGCTCC   >  2:298674/1‑150                                                                                                                                                                  CACAAAGGCCGCGTTAGTCGTACTCGAGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCAACGCCGCTGGTACAGGGTAAGGACCCGCTCCC  >  1:38166/1‑150                                                                                                                                                                  CACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCGCTCCC  >  2:72788/1‑150                                                                                                                                                                  CACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCGCTCCC  >  2:735250/1‑150                                                                                                                                                                  CACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCGCTCCC  >  2:786467/1‑150                                                                                                                                                                                                                                                                                                                         CGTGGGCGGGCACGGTTGACGTTGGAGACCACGGTGAGCAATGACGGCAGTGACGAGCCGGCGGTGAGGTTCAGCGGCCAGTACGTTCTGCACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/316169‑316005 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaaggccgctcccacaAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCGCTCCC  >  NC_002947/316053‑316198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.