| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 321952 = | 68 (1.290) | 4 (0.080) | 4/232 | NT | 6.0% | intergenic (+237/+221) | aguA/PP_0267 | agmatine deiminase/ferric siderophore receptor |
| ? | NC_002947 | 321978 = | 62 (1.250) | intergenic (+263/+195) | aguA/PP_0267 | agmatine deiminase/ferric siderophore receptor | |||||
TGCCACACCGCCATCAGCGCCTGCATCTCTGCTTCGCTGATCAACCCTTGGGGGTATCGCCCGGCAAGCAGACGTCGTGGGTCGGTCGTCCTGACCCTGATGCTTCCATGGTGTTTCAACCGCTTCGCCAAAAGCCTGAGCGATTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/322101‑321952‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggcgaAGCGGTTGAAACACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGC > NC_002947/321978‑322125 TGCCACACCGCCATCAGCGCCTGCATCTCTGCTTCGCTGATCAACCCTTGGGGGTATCGCCCGGCAAGCAGACGTCGTGGGTCGGTCGTCCTGACCCTGATGCTTCCATGGTGTTTCAACCGCTTCGCCAAAAGCCTGAGCGATTGGCGA > 2:234888/1‑150 TGCATCTCTGCTTCGCTGATCAACCCTTGGGGGTATCGCCCGGCAAGCAGACGTCGTGGGTCGGTCGTCCTGACCCTGATGCTTCCATGGTGTTTCAACCGCTTCGCCAAAAGCCTGAGCGATTGGC < 1:1255871/127‑1 TGCATCTCTGCTTCGCTGATCAACCCTTGGGGGTATCGCCCGGCAAGCAGACGTCGTGGGTCGGTCGTCCTGACCCTGATGCTTCCATGGTGTTTCAACCGCTTCGCCAAAAGCCTGAGCGATTGGC > 2:1255871/1‑127 GGGGTATCGCCCGGCAAGCAGACGTCGTGGGTCGGTCGTCCTGACCCTGATGCTTCCATGGTGTTTCAACCGCTTCGCCAAAAGCCTGAGCGATTGG > 1:1376702/1‑97 GGGGTATCGCCCGGCAAGCAGACGTCGTGGGTCGGTCGTCCTGACCCTGATGCTTCCATGGTGTTTCAACCGCTTCGCCAAAAGCCTGAGCGATTGG < 2:1376702/97‑1 GCTTCGCCAAAAGCCTGAGCGATTGGCGAAGCGGTTGAAACACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGAC > 1:450112/1‑80 GCTTCGCCAAAAGCCTGAGCGATTGGCGAAGCGGTTGAAACACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGAC < 2:450112/80‑1 TTCGCCAAAAGCCTGAGCGATTGGCGAAGCGGTTGAAACACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGC > 1:595979/1‑93 TTCGCCAAAAGCCTGAGCGATTGGCGAAGCGGTTGAAACACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGC < 2:595979/93‑1 GAAGCGGTTGAAACACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGC < 1:204562/150‑1 GAAGCGGTTGAAACACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGC < 2:1236854/150‑1 TGCCACACCGCCATCAGCGCCTGCATCTCTGCTTCGCTGATCAACCCTTGGGGGTATCGCCCGGCAAGCAGACGTCGTGGGTCGGTCGTCCTGACCCTGATGCTTCCATGGTGTTTCAACCGCTTCGCCAAAAGCCTGAGCGATTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/322101‑321952‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggcgaAGCGGTTGAAACACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGC > NC_002947/321978‑322125 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |