New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 661596	74 (1.410)	5 (0.100)	4/236	NT	6.4%	intergenic (+103/+24)	PP_0568/PP_0569	hypothetical protein/MATE efflux family protein
	?	NC_002947	= 661622	76 (1.510)					coding (1336/1338 nt)	PP_0569	MATE efflux family protein

ACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/661477‑661596 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgcTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGG‑TCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACAGTCC  <  NC_002947/661622‑661475                                                                                                                                                                                                                                                                               ACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGGCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGA                                                                                                                         <  1:274429/150‑1                                                              CACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAA                                                                                                                    <  1:383697/94‑1                                                              CACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAA                                                                                                                    >  2:383697/1‑94                                                                                AGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGA                                                                                                                         <  1:786585/71‑1                                                                                AGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGA                                                                                                                         >  2:786585/1‑71                                                                                                                    GTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGG‑TCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACAG     <  2:1154388/150‑1                                                                                                                     TCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGC                                                                                      >  1:86314/1‑69                                                                                                                     TCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGC                                                                                      <  2:86314/69‑1                                                                                                                       GCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGTGGATCATCGT‑GCCGCGGGCTAGTTTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACAGTCC  >  1:324463/1‑150                                                                                                                       GCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGG‑TCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACAGTCC  <  2:668758/150‑1                                                                                                                       GCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGG‑TCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACAGTCC  >  2:720757/1‑150                                                                                                                                                                                                                                                                               ACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/661477‑661596 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgcTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGG‑TCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACAGTCC  <  NC_002947/661622‑661475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.