| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 742473 | NA (NA) | 2 (0.040) | 4/234 | NT | NA | coding (571/1422 nt) | PP_0635 | group II intron‑encoding maturase |
| ? | NC_002947 | = 742487 | NA (NA) | coding (585/1422 nt) | PP_0635 | group II intron‑encoding maturase | |||||
CCAGCAAGCACTGCAGCAGCAGCTCACACCTATCTTCGACCCACTGTTCTCGGACTACAGCTATGGTTTTCGTCCGGGCAGAAGTACGCATCAAGCCATCGAGATGGCTCGTGCTCATGTGACAGCGGGACACCGCTGGTGCGTGGAAATCGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/742319‑742473‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgatc‑GAAGAACTTCTCCAGATCGATTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGTCCGAGAACAGTGGGTCGAAGATAGGTGTGAGCT < NC_002947/742487‑742339 CCAGCAAGCACTGCAGCAGCAGCTCACACCTATCTTCGACCCACTGTTCTCGGACTACAGCTATGGTTTTCGTCCGGGCAGAAGTACGCATCAAGCCATCGAGATGGCTCGTGCTCATGTGACAGCGGGACACCGCTGGTGCGTGGAAAT < 2:371300/150‑1CCAGCAAGCACTGCAGCAGCAGCTCACACCTATCTTCGACCCACTGTTCTCGGACTACAGCTATGGTTTTCGTCCGGGCAGAAGTACGCATCAAGCCATCGAGATGGCTCGTGCTCATGTGACAGCGGGACACCGCTGGTGCGTGGAAAT < 1:587830/150‑1 CAGCAAGCACTGCAGCAGCAGCTCACACCTATCTTCGACCCACTGTTCTCGGACTACAGCTATGGTTTTCGTCCGGGCAGAAGTACGCATCAAGCCATCGAGATGGCTCGTGCTCATGTGACAGCGGGACACCGCTGGTGCGTGGAAATC > 2:1146142/1‑150 GCAAGCACTGCAGCAGCAGCTCACACCTAGCTTCGACCCACTGTTCTCGGACTACAGCTATGGTTTTCGTCCGGGCAGAAGTACGCATCAAGCCATCGAGATGGCTCGTGCTCATGTGACAGCGGGACACCGCTGGTGCGTGGAAATCGA < 1:714573/150‑1 GCAAACACTGCAGCAGCAGCTCACACCTATCTTCGACCCACTGTTCTCGGACTACAGCTATGGTTTTCGTCCGGGCAGAAGTACGCATCAAGCCATCGAGATGGCTCGTGCTCATGTGACAGCGGGACACCGCTGGTGCGTGGAAATCGA < 1:325909/150‑1 CAAGCACTGCAGCAGCAGCTCACACCTATCTTCGACCCACTGTTCTCGGACTACAGCTATGGTTTTCGTCCGGGCAGAAGTACGCATCAAGCCATCGAGATGGCTCGTGCTCATGTGACAGCGGGACACCGCTGGTGCGTGGAAATCGAT < 1:661045/150‑1 AAGCACTGCAGCAGCAGCTCACACCTATCTTCGACCCACTGTTCTCGGACTACAGCTATGGTTTTCGTCCGGGCAGAAGTACGCATCAAGCCATCGAGATGGCTCGTGCTCATGTGACAGCGGGACACCGCTGGTGCGTGGAAATCGATC < 2:404574/150‑1 TCACACCTATCTTCGACCCACTGTTCTCGGACTACAGCTATGGTTTTCGTCCGGGCAGAAGTACGCATCAAGCCATCGAGATGGCTCGTGCTCATGTGACAGCGGGACACCGCTGGTGCGTGGAAATCGAT > 1:1067391/1‑131 TCACACCTATCTTCGACCCACTGTTCTCGGACTACAGCTATGGTTTTCGTCCGGGCAGAAGTACGCATCAAGCCATCGAGATGGCTCGTGCTCATGTGACAGCGGGACACCGCTGGTGCGTGGAAATCGAT < 2:1067391/131‑1 CTCATGTGACAGCGGGACACCGCTGGTGCGTGGAAATCGATC‑GAAGAACTTCTCCAGATC < 2:392853/60‑1 CTCATGTGACAGCGGGACACCGCTGGGGCGTGGAAATCGATC‑GAAGAACTTCTCCAGATC > 1:392853/1‑60 GGAAATCGATCTGGAGAAGTTCTTC‑GATCGATTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATA < 1:273831/119‑1 GGAAATCGATCTGGAGAAGTTCTTC‑GATCGATTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATA > 2:273831/1‑119 TCGATC‑GAAGAACTTCTCCAGATCGATTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGTCCGAGAACAGTGGGTCGAAGATAGGTGT < 2:430105/150‑1 TCGATC‑GAAGAACTTCTCCAGATCGATTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGTCCGAGAACAGTGGGTCGAAGATAGGTGT > 2:926129/1‑150 TCGATC‑GAAGAACTTCTCCAGATCGATTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGTCCGAGAACAGTGGGTCGAAGA < 1:1417597/143‑1 TCGATC‑GAAGAACTTCTCCAGATCGATTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGTCCGAGAACAGTGGGTCGAAGA > 2:1417597/1‑143 CGATC‑GAAGAACTTCTCCAGATCGATTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGTCCGAGAACAGTGGGTCGAAGATAGGTGTG < 1:1270251/150‑1 ATC‑GAAGAACTTCTCCAGATCGATTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGTCCGAGAACAGTGGGTCGAAGATAGGTGTGAG < 2:1399412/150‑1 ATC‑GAAGAACTTCTCCAGATCGATTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGTCCGAGAACAGTGGGTCGAAGATAGGTGTGAG < 1:837074/150‑1 ATC‑GAAGAACTTCTCCAGATCGATTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAG > 1:964974/1‑112 ATC‑GAAGAACTTCTCCAGATCGATTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAG < 2:964974/112‑1 TC‑GAAGAACTTCTCCAGATCGATTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTA > 2:1323947/1‑116 TC‑GAAGAACTTCTCCAGATCGATTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTA < 1:1323947/116‑1 C‑GAAGAACTTCTCCAGATCGATTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGTCCGAGAACAGTGGGTCGAAGATAGGTGTGAGCT < 2:260759/150‑1 CCAGCAAGCACTGCAGCAGCAGCTCACACCTATCTTCGACCCACTGTTCTCGGACTACAGCTATGGTTTTCGTCCGGGCAGAAGTACGCATCAAGCCATCGAGATGGCTCGTGCTCATGTGACAGCGGGACACCGCTGGTGCGTGGAAATCGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/742319‑742473‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgatc‑GAAGAACTTCTCCAGATCGATTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGTCCGAGAACAGTGGGTCGAAGATAGGTGTGAGCT < NC_002947/742487‑742339 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |