| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 743371 | NA (NA) | 12 (0.240) | 9/236 | NT | NA | intergenic (+47/+227) | PP_0635/PP_0636 | group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein |
| ? | NC_002947 | = 743379 | NA (NA) | intergenic (+55/+219) | PP_0635/PP_0636 | group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein | |||||
ATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/743218‑743371‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggAT‑TCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGT < NC_002947/743379‑743231 ATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACG > 2:751393/1‑150ATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACG > 1:1355226/1‑150 ttcagaAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGG > 2:668132/7‑150 TTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGG > 1:512147/1‑150 TCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGC < 1:467217/150‑1 TCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGC > 1:1222874/1‑150 CGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCG < 1:325583/150‑1 gacACATATGAACTACGCGCTGCCAAAGAAACTGTGGTACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGAT‑TCAC < 2:442472/147‑1 ATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGGACGCACGGTGGTGTGAGAGGACGGCGGAT‑TCACACCCGCC < 2:512147/150‑1 GAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGAT‑TCACACCCGCCGT < 1:751393/150‑1 GAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGAT‑TCACACCCGCCGT < 1:855018/150‑1 GAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGAT‑TCACACCCGCCGT < 2:1266973/150‑1 ACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGCTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGAT‑TCACACCCGCCGTCCTCT < 1:785983/150‑1 GCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGG > 1:973963/1‑102 GCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGG < 2:973963/102‑1 GTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCG > 2:1111827/1‑91 GTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCG < 1:1111827/91‑1 GATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTGCGCACGGTGGTGTGAGAGGACGGCGGAT‑TCACACCCGCCGTCCTCT > 2:802349/1‑95 GATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTGCGCACGGTGGTGTGAGAGGACGGCGGAT‑TCACACCCGCCGTCCTCT < 1:802349/95‑1 TTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGG < 2:602833/64‑1 TTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGG > 1:602833/1‑64 TTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCG > 1:1258083/1‑63 TTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCG < 2:1258083/63‑1 GCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGAT‑TCACACCCGCCGTCC < 1:383166/75‑1 GCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGAT‑TCACACCCGCCGTCC > 2:383166/1‑75 ACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGG < 1:392257/53‑1 ACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGG > 2:392257/1‑53 GTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGA‑ATCCGCC‑TCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGA < 2:1052295/125‑1 GTACGCACGGTGGTGTGAGAGGACGGCGGGT‑GTGAATCCGCC‑TCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGA > 1:1052295/1‑125 GGCGGAT‑TCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCAT > 1:914469/1‑150 GGCGGAT‑TCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCAT < 1:1383988/150‑1 GGCGGAT‑TCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGC < 2:1276663/141‑1 GGCGGAT‑TCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGC > 1:1276663/1‑141 GGCGGAT‑TCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGA < 1:518996/102‑1 GGCGGAT‑TCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGAGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGA > 2:518996/1‑102 gctGAT‑TCACACCCGCCGTCCTCTCACACCACCGTGCCTACGGTTCCGTACACGGCTGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAACCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATA < 1:533884/147‑1 CGGAT‑TCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATAT < 1:139200/150‑1 GGAT‑TCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATG > 2:418402/1‑150 GGAT‑TCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATG > 1:1365218/1‑150 GGAT‑TCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAG > 2:1209323/1‑142 GGAT‑TCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAG < 1:1209323/142‑1 GGAT‑TCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCA < 2:430463/92‑1 GGAT‑TCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCA > 1:430463/1‑92 GAT‑TCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGT < 1:1039912/150‑1 ATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/743218‑743371‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggAT‑TCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGT < NC_002947/743379‑743231 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |