New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	975170 =	69 (1.310)	10 (0.200)	10/240	NT	12.6%	intergenic (+16/+153)	ycfJ/suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
	?	NC_002947	975250 =	71 (1.380)					intergenic (+96/+73)	ycfJ/suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase

CGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/975321‑975170 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCA  >  NC_002947/975250‑975398                                                                                                                                                                                                                                                                                                               CGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGCC                                                                                                                                                         <  1:190164/150‑1                                                               GTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGCCGGCACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGC                                                                                           >  2:1117331/1‑150                                                                               TCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTA                                                                           >  1:1145137/1‑150                                                                                        GTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGCCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCAT                                                                  >  1:1395680/1‑150                                                                                              CCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGCCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTT                                                                                                 >  1:1307518/1‑113                                                                                              CCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGCCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTT                                                                                                 <  2:1307518/113‑1                                                                                                GCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTG                                                          >  2:1299706/1‑150                                                                                                   CCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCA                                                       <  2:1145137/150‑1                                                                                                      ACATGGATCGCATTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTG                                                          <  1:555934/144‑1                                                                                                      ACATGGATCGCATTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTG                                                          >  2:555934/1‑144                                                                                                                CATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGCCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGAT                                          <  2:1395680/150‑1                                                                                                                                                      CGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAG                                                                          >  1:733749/1‑80                                                                                                                                                      CGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAG                                                                          <  2:733749/80‑1                                                                                                                                                        GTACAGGCAACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTTCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTTAAGCACTTCACGTTGCCTGCA  >  2:508409/1‑150                                                                                                                                                                                                                                                                                                               CGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/975321‑975170 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCA  >  NC_002947/975250‑975398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.