New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1011399 =	79 (1.500)	4 (0.080)	4/226	NT	5.9%	intergenic (‑334/‑193)	PP_0871/prfC	glycine betaine/carnitine/choline ABC transporter permease/peptide chain release factor 3
	?	NC_002947	1011505 =	54 (1.120)					intergenic (‑440/‑87)	PP_0871/prfC	glycine betaine/carnitine/choline ABC transporter permease/peptide chain release factor 3

AGTATCATACCTGAAGTTGGGCCTGGACCAAAATCTGCCGAATGAATGGCGCCTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTACAGGTACGACACAGGGTTCGGATGCGGTGCAGTCTTCGTAGGAGCGAGTTTACCCGCGAAGAGGCCGGCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1011557‑1011399 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggcacaGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGACCAACCAGGCCGCCGAAGTCGCGAAGCGCCGCACTTTCGCAATCATTTCCCA  >  NC_002947/1011505‑1011647                                                                                                                                                                                                                                                                                                                AGTATCATACCTGAAGTTGGGCCTGGACCAAAATCTGCCGAATGAATGGCGCCTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTACAGGTACGACACAGGGTTCGGATGCGGTGCAGTCTTCGTAGGAGCGAGTTTACCCGCGAAGAG                                                                                                                                                          <  1:1176835/150‑1   TATCATACCTGAAGGTGGGCCTGGACCAAAATCTGCCGAATGAATGGCGCCTGTGCCGGCCCCTTCGCGGGTAAACCTGCGCCTACAGGTACGACACAGGGTTCGGATGCGGTGCAGTCTTCGTAGGAGCGAGTTTACCCGCGAAGAGGC                                                                                                                                                        <  2:271563/150‑1   TATCATACCTGAAGATGCGCCTGAACCAAAATCTGCCGAATGAATGGCGCCTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTACAGGTACGACACAGGGTTCGGATGCGGTGCAGTCTTCGTAGGAGCGAGTTTACCCGCGAAGAGGC                                                                                                                                                        <  2:329682/150‑1      CATACCTGAAGTTGGGCCTGGACCAAAATCTGCCGAATGAATGGCGCCTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTACAGGTACGACACAGGGTTCGGATGCGGTGCAGTCTTCGTAGGAGCGAGTTTACCCGCGAAGAGGCCGG                                                                                                                                                     <  2:1227127/150‑1                                            GAATGGCGCCTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTACAGGTACGACACAGGGTTCGGATGCGGTGCAGTCTTCGTAGGAGCGAGTTTACCCGCGAAGAGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCC                                                                                                               >  2:485349/1‑150                                                        TGCCGGCCCCTTCGCGGGTAAACCCGCGCCTACAGGTACGACACAGGGTTCGGATGCGGTGCAGTCTTCGTAGGAGCGAGTTTACCCGCGAAGAGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTA                                                                                                   >  1:681363/1‑150                                                                       GGGTAAACCCGCGCCTACAGGTACGACACAGGGTTCGGATGCGGTGCAGTCTTCGTAGGAGCGAGTTTACCCGCGAAGAGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTT                                                                                    <  1:485349/150‑1                                                                               CCGCGCCTACAGGTACGACACAGGGTTCGGATGCGGTGCAGTCTTCGTAGGAGCGAGTTTACCCGCGAAGAGGCCG                                                                                                                                                      >  1:677752/1‑76                                                                               CCGCGCCTACAGGTACGACACAGGGTTCGGATGCGGTGCAGTCTTCGTAGGAGCGAGTTTACCCGCGAAGAGGCCG                                                                                                                                                      <  2:677752/76‑1                                                                                                   CAGTGTTCGGATGCGGTGCAGTCTTCGTAGGAGCGAGTTTACCCGCGAAGAGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCAT                                                        <  2:681363/150‑1                                                                                                                                                      GGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGACCAACCAGGCCGCCGAAGTCGCGAAGCGCCGCACTTTCGCAATCATTTC     <  1:1024793/150‑1                                                                                                                                                       GCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGACCAACCAGCCCGCCGAAGTCGCGAAGCGCCGCACTTTCGCAATCATTTCC    <  2:50106/150‑1                                                                                                                                                         CGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGACCAACCAGGCCGCCGAAGTCGCGAAGCGCCGCACTTTCGCAATCATTTCCCA  >  1:1291555/1‑150                                                                                                                                                                                                                                                                                                                AGTATCATACCTGAAGTTGGGCCTGGACCAAAATCTGCCGAATGAATGGCGCCTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTACAGGTACGACACAGGGTTCGGATGCGGTGCAGTCTTCGTAGGAGCGAGTTTACCCGCGAAGAGGCCGGCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1011557‑1011399 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggcacaGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGACCAACCAGGCCGCCGAAGTCGCGAAGCGCCGCACTTTCGCAATCATTTCCCA  >  NC_002947/1011505‑1011647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.