| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1297204 = | NA (NA) | 12 (0.240) | 9/236 | NT | NA | coding (386/1329 nt) | PP_1133 | transposase |
| ? | NC_002947 | 1297224 = | NA (NA) | coding (406/1329 nt) | PP_1133 | transposase | |||||
CTTCATGCCAGTTACACCGGAAATATCACTGATGACATTGGCCAGCTGGATGTTCATTTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1297355‑1297204‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcaTTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCATGAAGATTTTGCGGGCCATCT > NC_002947/1297224‑1297371 CTTCATGCCAGTTACACCGGAAATATCACTGATGACATTGGCCAGCTGGATGTTCATTTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAGGT > 2:496786/1‑150 TTCATGCCAGTTACACCGGAAATATCACTGATGACATTGGCCAGCTGGATGTTCATTTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAGGTC < 2:287923/150‑1 TTCATGCCAGTTACACCGGAAATATCACTGATGACATTGGCCAGCTGGATGTTCATTTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAGGTC > 1:464994/1‑150 TTCATGCCAGTTACACCGGAAATATCACTGATGACATTGGCCAGCTGGATGTTCATTTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAGGTC > 1:701342/1‑150 TCATGCCAGTTACACCGGAAATATCACTGATGACATTGGCCAGCTGGATGTTCATTTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAGGTCA > 1:540011/1‑150 TCATGCCAGTTACACCGGAAATATCACTGATGACATTGGCCAGCTGGATGTTCATTTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAGGTCA < 2:823304/150‑1 TCATGCCAGTTACACCGGAAATATCACTGATGACACTGGCGGGCTGGATGTTCATGTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAGGTCA < 1:374027/150‑1 ATGCCAGTTACACCGGAAATATCACTGATGACATTGGCCAGCTGGATGTTCATTTGGCTCATGGCCCTTTGCATCCGGGTCAGCGTATGTGCCTGGTCTTTCACTTTGGAAGCAGGCTGCCTGACCAATGACCGGACGCAGCAGGTaaaa > 1:380522/1‑146 GTTACACCGGAAATATCACTGATGACATTGGCCAGCTGGATGTTCATTTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAGGTCA < 2:643803/142‑1 GTTACACCGGAAATATCACTGATGACATTGGCCAGCTGGATGTTCATTTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAGGTCA > 1:643803/1‑142 TTACACCGGAAATATCACTGATGACATTGGCCCGCTGGATGTTCATTTGGCTCATGGCCGTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCTGCTGCGTCCGGTCATTGGTCAGG < 1:15675/150‑1 ACATTGGCCAGCTGGATGTTCATTTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCTGCTGCGTCCGGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGA < 2:1110662/150‑1 ATTGGCCAGCTGGATGTTCATTTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAGGTCA > 1:17061/1‑116 ATTGGCCAGCTGGATGTTCATTTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAGGTCA < 2:17061/116‑1 TCATTTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAG < 2:103606/95‑1 TCATTTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAG > 1:103606/1‑95 ATTTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAGGTCA < 2:510460/97‑1 ATTTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAGGTCA > 1:510460/1‑97 CTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAGGT > 1:389498/1‑81 CTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAGGT < 2:389498/81‑1 TGACCAATGACCGGACGCAGCAGGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAAAAGGATGCAAAA‑GCCAGCCCCCTAAGATAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACT > 1:1236497/1‑150 GACCAATGACCGGACGCAGCAGGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCA > 2:126724/1‑93 GACCAATGACCGGACGCAGCAGGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCA < 1:126724/93‑1 CAATGACCGGACGCAGCAGGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCA > 1:509257/1‑150 CAATGACCGGACGCAGCAGGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCA > 2:1018807/1‑150 CAATGACCGGACGCAGCAGGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCA > 1:982098/1‑150 CAATGACCGGACGCAGCAGGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGG < 1:6776/148‑1 CAATGACCGGACGCAGCAGGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGG > 2:6776/1‑148 ATGACCGGACGCAGCAGGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCATG > 1:1009321/1‑150 TGACCGGACGCAGCAGGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCATGA > 2:1245844/1‑150 CAGCAGGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCATGAAGATTTTGCG < 1:1018807/150‑1 AGCAGGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCATGAAGATTTTGCGG < 2:982098/150‑1 GGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCATGAAGATTTTGCGGGCCA > 2:550687/1‑150 GGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCT < 2:1249305/52‑1 GGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCT > 1:1249305/1‑52 GTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCATGAAGATTTTGCGGGCCAT > 2:264177/1‑150 GTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGACCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCATGAAGATTTTGCGGGCCAT > 2:692766/1‑150 GTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCA > 2:211144/1‑71 GTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCA < 1:211144/71‑1 TCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACTATTCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCATGAAGATTTTGCGGGCCATC > 1:473920/1‑150 TCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGC > 2:102727/1‑129 TCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGC < 1:102727/129‑1 CATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCATGAAGATTTTGCGGGCCATCT < 2:316365/150‑1 CATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCATGAAGATTTTGCGGGCCATCT < 1:914378/150‑1 CATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCATGAAGATTTTGCGGGCCATCT < 1:355981/150‑1 ATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCG < 1:614642/116‑1 ATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCG > 2:614642/1‑116 CTTCATGCCAGTTACACCGGAAATATCACTGATGACATTGGCCAGCTGGATGTTCATTTGGCTCATGGCCTTTTGCATCCGGTTCAGCGTCTGCGCCTGGTCTTTCACTTTGGAAGCACGCTGCCTGACCAATGACCGGACGCAGCAGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1297355‑1297204‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcaTTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCATGAGCC‑AAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCATGAAGATTTTGCGGGCCATCT > NC_002947/1297224‑1297371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |