New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1392920	26 (0.490)	4 (0.110)	4/172	NT	14.3%	intergenic (+84/‑102)	PP_1214/ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
	?	NC_002947	= 1392946	30 (0.820)					intergenic (+110/‑76)	PP_1214/ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC

GAAGACCTGGACGACGTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1392762‑1392920 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggccctttcgcgggtaaacccgctcctacaggtaCTGCACCACATTTGAAATGGGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGGCGCTATCAAACGCTCAGAGTTGGCACAAAATGCCAAATCACCTTAGCCGAGGTTTTCCATGATCTCGTCGGAAATC  <  NC_002947/1392946‑1392803                                                                                                                                                                                                                                                                                                                 GAAGACCTGGACGACGTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGGGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTC                                                                                                                                                           >  1:661620/1‑150   AGACCTGGACGACGTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTTTACCCGCgaaa                                                                                                                                                         <  1:741108/150‑5     ACCTGGACGACGTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGC                                                                                                                                                                                 >  2:460138/1‑124     ACCTGGACGACGTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGC                                                                                                                                                                                 <  1:460138/124‑1      CCTGGACGACGTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACA                                                                                                                                                      <  2:783477/150‑1                                                                                               CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATGGGCGTAATACCTGTA                                                                                                                <  1:1325276/99‑1                                                                                               CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATGGGCGTAATACCTGTA                                                                                                                >  2:1325276/1‑99                                                                                                 AACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGT                                                                                                                                                   <  2:627754/62‑1                                                                                                 AACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGT                                                                                                                                                   >  1:627754/1‑62                                                                                                  ACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATGGGCGTAATACCT                                                                                                                   >  2:870047/1‑93                                                                                                  ACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATGGGCGTAATACCT                                                                                                                   <  1:870047/93‑1                                                                                                                         GTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACA                                                                                                                                                      >  1:390027/1‑35                                                                                                                         GTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACA                                                                                                                                                      <  2:390027/35‑1                                                                                                                               GCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATGGGCGTAATACCTGTAGGAGCGG                                                                                                         <  1:801648/74‑1                                                                                                                               GCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATGGGCGTAATACCTGTAGGAGCGG                                                                                                         >  2:801648/1‑74                                                                                                                                CCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATGGGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGGCGCTATCAAACGCTCAGAGTTGGCACAAAATGCCAAATCACCTTAGCCGA                            <  2:35582/150‑1                                                                                                                                 CCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATGGGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGGCGCTATCAAACGCTCAGAGTTGGCACAAAATGCCAAATCACCTTAGCCGAG                           >  1:504758/1‑150                                                                                                                                 CCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATGGGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGGCGCTATCAAACGCTCAGAGTTGGCACAAAATGCCAAATCACCTTAGCCGAG                           <  2:504758/150‑1                                                                                                                                  CTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATGGGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGGCGCTATCAAACGCTCAGAGTTGGCACAAAA                                                <  1:125548/128‑1                                                                                                                                  CTTTCGCGGGTAAACCCGCTCCTACAGATACTGCACCACATTTGAAATGGGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGGCGCTATCAAACGCTCAGAGTTGGCACAAAA                                                >  2:125548/1‑128                                                                                                                                         GGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATGGGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGGCGCTATCAAACGCTCAGAGTTGGCACAAAATGCCAAATCACCTTAGCCGAGGTTTTCCA                   <  2:882502/150‑1                                                                                                                                          GGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATGGGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGGCGCTATCAAACGCTCAGAGTTGGCACAAAATGCCAAATCACCTTAGCCGAGGTTTTCCAT                  >  1:1240108/1‑150                                                                                                                                           GTAAACCCGCTCCTACAGGTACTGCACCACATTTGAAATGGGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGGCGCTATCAAACGCTCAGAGTTGGCACAAAATGCCAAATCACCTTAGCCGAGGTTTTCCATG                 >  2:26026/1‑150                                                                                                                                                  CGCTCCTACAGGTACTGCACCACATTTGAAATGGGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGGCGCTATCAAACGCTCAGAGTTGGCACAAAATGCCAAATCACCTTAGCCGAGGTTTTCCATGATCTCGT          <  2:318842/150‑1                                                                                                                                                     TCCTACAGGTACTGCACCACATTTGAAATGGGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGGCGCTATCAAACGCTCAGAGTTGGCACAAAATGCCAAATCACCTTAGCCGAGGTTTTCCATGAT               <  2:243290/142‑1                                                                                                                                                     TCCTACAGGTACTGCACCACATTTGAAATGGGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGGCGCTATCAAACGCTCAGAGTTGGCACAAAATGCCAAATCACCTTAGCCGAGGTTTTCCATGAT               >  1:243290/1‑142                                                                                                                                                       CTACAGGTACTGCACCACATTTGAAATGGGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGGCGCTATCAAACGCTCAGAGTTGGCACAAAATGCCAAATCACCTTAGCCGAGGTTTTCCATGATCTCGTCGGAA     >  1:547413/1‑150                                                                                                                                                          CAGGTACTGCGCCACATGTGAAATGGGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGGCGCTATCAAACGCTCAGAGTTGGCACAAAATGCCAAATCACCTTAGCCGAGGTTTTCCATGATCTCGTCGGAAATC  <  2:256150/150‑1                                                                                                                                                                                                                                                                                                                 GAAGACCTGGACGACGTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1392762‑1392920 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggccctttcgcgggtaaacccgctcctacaggtaCTGCACCACATTTGAAATGGGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGGCGCTATCAAACGCTCAGAGTTGGCACAAAATGCCAAATCACCTTAGCCGAGGTTTTCCATGATCTCGTCGGAAATC  <  NC_002947/1392946‑1392803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.