New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1426821	NA (NA)	23 (0.460)	10/236	NT	NA	coding (712/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	= 1426852	NA (NA)					coding (743/1422 nt)	PP_1250	group II intron‑encoding maturase

TGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1426669‑1426821 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGAT  <  NC_002947/1426852‑1426705                                                                                                                                                                                                                                                                                                               TGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGATACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCAC                                                                                                                                                         <  2:1404767/150‑1    AACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC                                                                                                                                                      >  1:1343031/1‑150    AACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC                                                                                                                                                      >  1:934512/1‑150                    GTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTT                                                                                                                                      >  1:1145995/1‑150                             TCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCC                                                                                                                            <  1:476277/150‑1                                GGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCCTC                                                                                                                         <  1:99225/150‑1                                  TCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCC                                                                                                                           <  2:496961/147‑1                                  TCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCC                                                                                                                           >  1:496961/1‑147                                          GACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGG                                                                                                                <  2:1145995/150‑1                                          GACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGG                                                                                                                <  1:687782/150‑1                                           ACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGG                                                                                                               <  2:922200/150‑1                                            CATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGC                                                                                                              <  2:1318185/150‑1                                               CCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGA                                                                                                           <  2:1290317/150‑1                                                CTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC                                                                                                          <  1:610921/150‑1                                                       CCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGA                                                                                                           >  1:758145/1‑142                                                       CCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGA                                                                                                           <  2:758145/142‑1                                                           tATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGG                                                                                                                <  1:278570/132‑1                                                           tATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGG                                                                                                                >  2:278570/2‑133                                                                 ACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAG‑CAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGA                                                                                                        >  2:1405462/1‑134                                                                 ACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAG‑CAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGA                                                                                                        <  1:1405462/134‑1                                                                                           TCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCC                                                                                                                           <  2:1361320/89‑1                                                                                           TCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCAGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCC                                                                                                                           >  1:1361320/1‑89                                                                                                       GCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCA                                                                                                                                                          <  1:367353/47‑1                                                                                                       GCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCA                                                                                                                                                          >  2:367353/1‑47                                                                                                               CTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGG                                                                                                                >  1:776745/1‑81                                                                                                               CTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGG                                                                                                                <  2:776745/81‑1                                                                                                                         GGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGC                                                                                                              >  1:1058037/1‑73                                                                                                                         GGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGC                                                                                                              <  2:1058037/73‑1                                                                                                                                                     ACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGA                                      >  2:364550/1‑117                                                                                                                                                     ACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGA                                      <  1:364550/117‑1                                                                                                                                                       GGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGA   <  2:1271860/150‑1                                                                                                                                                       GGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGA   <  1:20370/150‑1                                                                                                                                                       GGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATC                                    >  1:791195/1‑117                                                                                                                                                       GGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATC                                    <  2:791195/117‑1                                                                                                                                                        GCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGTTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGAT  <  1:804826/150‑1                                                                                                                                                        GCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGAT  <  2:1304099/150‑1                                                                                                                                                        GCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGAT  <  1:95057/150‑1                                                                                                                                                        GCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGAT  <  2:721757/150‑1                                                                                                                                                        GCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGAGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGAT  >  1:299302/1‑150                                                                                                                                                                                                                                                                                                               TGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1426669‑1426821 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGAT  <  NC_002947/1426852‑1426705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.