New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1799915	82 (1.560)	9 (0.210)	6/200	NT	11.4%	intergenic (+43/‑144)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha
	?	NC_002947	= 1799957	73 (1.710)					intergenic (+85/‑102)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha

GCTACCCGACCCCGGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1799745‑1799915 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccttcgcgggcacgcccgctcCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGCGAAGGAA  <  NC_002947/1799957‑1799809                                                                                                                                                                                                                                                                                                                                  GCTACCCGACCCCGGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGC                                                                                                                                                                            <  1:692344/150‑1     CCCGACCCCGGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGTCAATTCATCGGCGTTACTTGGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGGGTCACCGATTCCCTGATCTGAGCTATTGGGGCGACTTGGCGGCCCTT                                                                                                                                                                        >  1:708549/1‑150     CCCGACCCCGGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTT                                                                                                                                                                        >  1:1017708/1‑150           CCCGGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGG                                                                                                                                                                  <  2:1212458/150‑1           CCCGGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGG                                                                                                                                                                  >  2:136479/1‑150                    TCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTTCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGC                                                                                                                                                         >  1:248546/1‑150                     CTCGAGGCGTTGGCAAATCTTGGGCATACGCAAAATCAACGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCT                                                                                                                                                        >  2:1303033/1‑150                      TCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTC                                                                                                                                                       >  1:536233/1‑150                      TCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTC                                                                                                                                                       >  2:1357838/1‑150                                                                GTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTTACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGA                                                                                                             <  2:403617/150‑1                                                                  TCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGA                                                                                                           <  1:1303033/150‑1                                                                        GCCCCGGTGCGGGGGACTTGGAAAGCGCGCGGAGGCGTTACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGt                                                                                                     <  1:1023207/150‑2                                                                         CCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGG                                                                                                       <  2:452386/147‑1                                                                         CCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGG                                                                                                       >  1:452386/1‑147                                                                         CCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCA                                                                                                                                                                <  1:342799/90‑1                                                                         CCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCA                                                                                                                                                                >  2:342799/1‑90                                                                                               AGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGC                                                                                                                                                             <  2:529101/71‑1                                                                                               AGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGC                                                                                                                                                             >  1:529101/1‑71                                                                                                            GTCACCGATTCCCTGATCTGACCTATTGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGG                                                                                                       >  1:1418309/1‑112                                                                                                            GTCACCGATTCCCTGATCTGACCTATTGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGG                                                                                                       <  2:1418309/112‑1                                                                                                                  GATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGG                                                                                                       <  1:1180489/106‑1                                                                                                                  GATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGG                                                                                                       >  2:1180489/1‑106                                                                                                                                                      CCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCC                       >  1:541193/1‑150                                                                                                                                                         ggaGCGGGCGTGCCCACTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGACGCGGCCCCAATAGGTCAGATCAGGGAATCGGTCACGCCTCCGCGCGCTTCCCAAGCCGCC                    >  2:379546/4‑150                                                                                                                                                         TTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCC                    <  2:159625/150‑1                                                                                                                                                         TTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCC                    >  1:1375995/1‑150                                                                                                                                                         TTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGG                                                                                                       <  2:84594/67‑1                                                                                                                                                         TTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGG                                                                                                       >  1:84594/1‑67                                                                                                                                                              GGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCAC               >  2:167861/1‑150                                                                                                                                                              GGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCAC               >  1:1009450/1‑150                                                                                                                                                                 CACGCCCGCTCCCACAGGTACGGCCCCGCCCACCAGACCGTTGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGG            <  2:1403113/150‑1                                                                                                                                                                  ACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAA                                                                      >  2:331502/1‑91                                                                                                                                                                  ACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAA                                                                      <  1:331502/91‑1                                                                                                                                                                      CCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGCGA       >  2:1080296/1‑150                                                                                                                                                                      CCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGCGA       >  2:1017708/1‑150                                                                                                                                                                      CCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGCGA       >  2:362921/1‑150                                                                                                                                                                       CGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGCGAA      <  2:1190968/150‑1                                                                                                                                                                       CGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGCGAA      <  2:1190916/150‑1                                                                                                                                                                       CGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGCGAA      <  2:1426825/150‑1                                                                                                                                                                       CGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGCGAA      <  1:362921/150‑1                                                                                                                                                                       CGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAACCGCCCGCACCGGGGCGAA      <  2:414070/150‑1                                                                                                                                                                       CGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGATCCTCGAAGCGGCCCCCATATGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCGGCATCCGGGCGAA      >  1:461430/1‑150                                                                                                                                                                           CCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGCGAAGGAA  <  1:694530/150‑1                                                                                                                                                                                                                                                                                                                                  GCTACCCGACCCCGGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1799745‑1799915 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccttcgcgggcacgcccgctcCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGCGAAGGAA  <  NC_002947/1799957‑1799809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.