| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1838113 = | 50 (0.950) | 3 (0.060) | 3/226 | NT | 5.7% | intergenic (+18/+86) | PP_1642/PP_1643 | hypothetical protein/membrane protein |
| ? | NC_002947 | 1838195 = | 54 (1.120) | intergenic (+100/+4) | PP_1642/PP_1643 | hypothetical protein/membrane protein | |||||
TTCATTGCCGGGCTACTGTACGTGCGCTGGAAGTTCCAGCATGAGCGGCGCATGGCGGGCGAAGGCAGTTAGATTTTTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1838270‑1838113‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaaAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCA > NC_002947/1838195‑1838338 TTCATTGCCGGGCTACTGTACGTGCGCTGGAAGTTCCAGCATGAGCGGCGCATGGCGGGCGAAGGCAGTTAGATTTTTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATG > 2:709704/1‑150TTCATTGCCGGGCTACTGTACGTGCGCTGGAAGTTCCAGCATGAGCGGCGCATGGCGGGCGAAGGCAGTTAGATTTTTCGCGGGCACGCCCGCTCCCACAGATACTGCCCCGAAATTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATG > 1:803991/1‑150 GCGGCGCATGGCGGGCGAAGGCAGTTAGATTTTTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCAT > 1:1275416/1‑105 GCGGCGCATGGCGGGCGAAGGCAGTTAGATTTTTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCAT < 2:1275416/105‑1 GGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAAAAATCTAACTGCCTTCACCCGCCATGCGCCTCGCATGCTTGTATGACTAGCGCACTTACAGGATCACGGCAAa > 2:299170/1‑149 GCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGATGGAACATCCAGCGCACGTACAGTAGCCCGGCAATGAACAG > 1:13343/1‑150 CCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCC > 2:461587/1‑150 CCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGC > 2:883117/1‑150 CGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCA < 1:480978/150‑1 TTCATTGCCGGGCTACTGTACGTGCGCTGGAAGTTCCAGCATGAGCGGCGCATGGCGGGCGAAGGCAGTTAGATTTTTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1838270‑1838113‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaaAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCA > NC_002947/1838195‑1838338 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |