New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1899422	49 (0.930)	7 (0.150)	6/226	NT	13.3%	intergenic (+450/‑70)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	= 1899456	46 (0.950)					intergenic (+484/‑36)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase

CCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1899304‑1899422 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaggcgccg‑GCTGCCCCGGCATGCTGATGCAAGCGGGGCAACACGGCGCCTTTGTCGTGAAGTGGTGAGGGCTGTCGACGTTGA  <  NC_002947/1899456‑1899382                                                                                                                                                                                                     CCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGGCATGCTGATGCAAGCGGGGC                                               <  2:1353443/150‑1        GGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCTGGCATGCTGATGCAAGCGGGGCAACACGG                                        <  1:970239/150‑1        GGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCG‑GCTGCCCCGGCATGCTGATGCAAGCGGGGCAACACGGC                                       <  2:355134/150‑1                                              CCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCG‑GCTGCCCCGGCATGCTGATGCAAGCGGGGCAACACGGC                                       >  1:1024373/1‑112                                              CCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCG‑GCTGCCCCGGCATGCTGATGCAAGCGGGGCAACACGGC                                       <  2:1024373/112‑1                                                                                  ACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCG‑GCTGCCCCGGCATGCTGATGCAAGCGGG                                                 >  1:1289584/1‑66                                                                                  ACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCG‑GCTGCCCCGGCATGCTGATGCAAGCGGG                                                 <  2:1289584/66‑1                                                                                                                AGGCGCCG‑GCTGCCCCGGCATGCTGATGCAAGCGGGGCAACACGGCGCCTTTGTCGTGAAGTGGTGAGGGCTGTCGACGTTGA  <  1:1333791/83‑1                                                                                                                AGGCGCCG‑GCTGCCCCGGCATGCTGATGCAAGCGGGGCAACACGGCGCCTTTGTCGTGAAGTGGTGAGGGCTGTCGACGTTGA  >  2:1333791/1‑83                                                                                                                                                                                                     CCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1899304‑1899422 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaggcgccg‑GCTGCCCCGGCATGCTGATGCAAGCGGGGCAACACGGCGCCTTTGTCGTGAAGTGGTGAGGGCTGTCGACGTTGA  <  NC_002947/1899456‑1899382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.